Factsheet for Bra017626.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49274	Canola	cytosol	82.84	88.27
Bra034602.1-P	Field mustard	plasma membrane	55.5	56.37
Bra011487.1-P	Field mustard	cytosol, plastid	70.06	53.0
VIT_03s0063g00080.t01	Wine grape	plasma membrane	63.55	48.38
PGSC0003DMT400066581	Potato	plasma membrane, plastid	62.84	47.71
Solyc01g107880.2.1	Tomato	plasma membrane, plastid	62.72	47.66
KRH70672	Soybean	plasma membrane, plastid	63.08	47.42
KRH50333	Soybean	mitochondrion	62.72	47.15
Os06t0639100-02	Rice	cytosol, peroxisome, plasma membrane	56.45	43.84
KXG20452	Sorghum	cytosol	56.09	43.65
Zm00001d036765_P003	Maize	cytosol	55.5	43.23
TraesCS7A01G524600.2	Wheat	cytosol	56.09	43.13
Zm00001d046624_P005	Maize	cytosol	55.86	42.87
TraesCS7B01G442100.1	Wheat	cytosol	55.74	42.86
HORVU7Hr1G116420.2	Barley	cytosol, mitochondrion, plasma membrane	55.74	41.14
TraesCS7D01G513500.2	Wheat	cytosol	56.09	40.97
GSMUA_Achr3P13170_001	Banana	plasma membrane	42.84	36.79
Bra029598.1-P	Field mustard	cytosol	8.05	27.64
Bra011370.1-P	Field mustard	cytosol	17.75	25.91
Bra011369.1-P	Field mustard	cytosol, peroxisome, plasma membrane	25.8	24.69
Bra001210.1-P	Field mustard	cytosol	24.38	22.25
Bra029597.1-P	Field mustard	cytosol	24.73	22.14

Protein Annotations

MapMan:19.2.1.1.1.1	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra017626	EnsemblPlants:Bra017626.1	EnsemblPlants:Bra017626.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872
InterPro:IPR011016	InterPro:IPR013083	UniProt:M4DM94	PFAM:PF12906	PFscan:PS51292	PANTHER:PTHR13145
SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI00025411F2	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

AT4G34100 (E=2e-128) | protein binding / zinc ion binding

Coordinates

chrA03:+:29399994..29403224

Molecular Weight (calculated)

95040.2 Da

IEP (calculated)

6.462

GRAVY (calculated)

0.551

Length

845 amino acids

Sequence
(BLAST)

001: MDYATKVSIH IDDEDDEEEE VCRICRNPGD ADNPLRYPCA CSGSIKFVHE DCLLQWLSFS KARHCEVCKH SFAFSPLYAE NAPTRLPFHE FVVGVAMKAC
101: NSRLPRLSFV LCVWLLTVPF VTFWMWRLSF LRFFGEEAQR LFLSHVSTTV VLIDSLLGFI LSASIMFVLR EAASFRDYFR HLRVSLYELV GLEGPLFRLV
201: ENAFSVLASN MLFIGGVIFV PFTLGRVILY HFADTGLSLR NILTLSLNNV LTAAVSSLIN NGQLTEMVKV NGSELSGAID TLFVAAAGLS STLYDVTTLT
301: VGYMFIVSLV LLYLGITALI RYFKDEPLTV EGVYGIAWIV ETVSPLLGQF LVVMTLGIRL VSFVVVIFGV FPLMCGWWLD VCTVTMFGQT MSYRLQFLSV
401: SPLASSLVHW VVGAVYDWYS LILENLLRQV LRPEVLYFLY GPEDDEEEET IRYLIHDPVH KIARDGFLSG AQYGSWIVLL VFLPVKLAIW MAPSVFPLDI
501: SVSDPYTEIP AGILLLTICT PFIIEHFKDN AGQEQENGEP GRQNRAIAAL PAADDPNRSL LQEYNLQLRI TLLLLVASVT LLLVHSTLIV APVSLGRALF
601: NAIPVLPIRH GIKCSDLYAF FTGTYVIWTT ISGARYAMEH VKSERTSVLL NRIWKWCGIV IKSSVLLGIW VLIIPVLIGL LFELLVIVPI KVPVDESPVF
701: ILYQDWALGL IILKIWTRLM VDDSWRAKFE RVKEDGFSRL QGLWVLREIV LPVVMKLVTA LCVPHVLARG VFPMLGCPLV VNSAVYRFAW IGCLSASLLC
801: FCAKRCHVWF RNLHNSIRDD RYIIGQRLHN SGEEAALAVK ESQSS

Best Arabidopsis Sequence Match ( AT4G34100.2 )
(BLAST)

0001: MEISPADSLS ISGAAASEVV SEPSVSSSSS SSSPNQASPN PFSNMDPAVS TATGSRYVDD DEDEEDVCRI CRNPGDADNP LRYPCACSGS IKFVHQDCLL
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSEYN FVVRIILLLL
0801: VAWVTLLLFN SALIVVPVSL GRALFSAIPI LPITHGIKCN DLYAFVIGTY AFWTTISGAR YAIEHVKSKR TSVLLNQIWK WCGIVFKSSV LLAIWVFIIP
0901: VLIGLLFELL VIVPMRVPVD ESPVFLLYQD WALGLIFLKI WTRLVMLDHM LPIVDDSWRA KFERVREDGF SRLQGLWVLR EIVFPIVMKL LTALCVPYVL
1001: ARGVFPMLGY PLVVNSAVYR FAWIGCLSVS LFCFCAKRCH VWFRNLHNSI RDDRYLIGRR LHNFGEAALA NQNQNQSSED AGDGVLIGRE GDVDNGLRLR
1101: RAIQQEA

Arabidopsis Description

SUD1Probable E3 ubiquitin ligase SUD1 [Source:UniProtKB/Swiss-Prot;Acc:F4JKK0]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.