Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- cytosol 1
- plasma membrane 3
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc04g008430.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34100.1 | Solyc04g008430.1.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400066581 | Potato | plasma membrane, plastid | 99.1 | 99.01 |
| VIT_03s0063g00080.t01 | Wine grape | plasma membrane | 78.15 | 78.29 |
| KRH70672 | Soybean | plasma membrane, plastid | 79.05 | 78.2 |
| KRH50333 | Soybean | mitochondrion | 78.69 | 77.85 |
| AT4G34100.1 | Thale cress | cytosol, plastid | 75.27 | 75.54 |
| CDX69024 | Canola | cytosol, plastid | 74.91 | 75.18 |
| CDX75396 | Canola | cytosol, plastid | 74.91 | 75.05 |
| Bra011487.1-P | Field mustard | cytosol, plastid | 74.82 | 74.49 |
| Os06t0639100-02 | Rice | cytosol, peroxisome, plasma membrane | 67.81 | 69.3 |
| KXG20452 | Sorghum | cytosol | 67.27 | 68.88 |
| TraesCS7A01G524600.2 | Wheat | cytosol | 67.27 | 68.06 |
| TraesCS7B01G442100.1 | Wheat | cytosol | 67.27 | 68.06 |
| Zm00001d036765_P003 | Maize | cytosol | 66.37 | 68.02 |
| Zm00001d046624_P005 | Maize | cytosol | 67.0 | 67.67 |
| HORVU7Hr1G116420.2 | Barley | cytosol, mitochondrion, plasma membrane | 67.54 | 65.59 |
| TraesCS7D01G513500.2 | Wheat | cytosol | 67.36 | 64.74 |
| CDY51866 | Canola | cytosol | 49.01 | 63.37 |
| Bra017626.1-P | Field mustard | cytosol | 47.66 | 62.72 |
| CDY62724 | Canola | cytosol | 46.94 | 61.7 |
| CDY51956 | Canola | cytosol | 46.22 | 61.34 |
| CDY49274 | Canola | cytosol | 43.62 | 61.16 |
| GSMUA_Achr3P13170_001 | Banana | plasma membrane | 49.91 | 56.4 |
| Bra034602.1-P | Field mustard | plasma membrane | 42.18 | 56.37 |
| Solyc01g020190.2.1 | Tomato | plastid | 4.95 | 44.0 |
Protein Annotations
| MapMan:19.2.1.1.1.1 | Gene3D:3.30.40.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0006629 |
| GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0008299 |
| GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009414 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0010025 |
| GO:GO:0010143 | GO:GO:0010345 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0019748 | GO:GO:0030176 | GO:GO:0030433 | GO:GO:0042335 | GO:GO:0046872 | GO:GO:1900490 |
| GO:GO:1904264 | InterPro:IPR011016 | InterPro:IPR013083 | UniProt:K4B304 | PFAM:PF12906 | PFscan:PS51292 |
| PANTHER:PTHR13145 | SMART:SM00744 | SUPFAM:SSF57850 | EnsemblPlantsGene:Solyc01g107880.2 | EnsemblPlants:Solyc01g107880.2.1 | TMHMM:TMhelix |
| UniParc:UPI0002768049 | InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
Probable E3 ubiquitin ligase SUD1 [Source:Projected from Arabidopsis thaliana (AT4G34100) UniProtKB/Swiss-Prot;Acc:F4JKK0]
Coordinates
chr1:-:95267828..95274924
Molecular Weight (calculated)
124332.0 Da
IEP (calculated)
6.310
GRAVY (calculated)
0.289
Length
1112 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEIATAVPAS NDGGGGGNSP AERSSADAIN SSSSPSASSS SGLSTDQVTR KDLNSLASRF DDDEEEEDVC RICRNPGEAD NPLRYPCACS GSIKYVHQDC
0101: LLQWLNHSNA RQCEVCKHAF SFSPVYAENA PARLPFQEFV VGMAMKACHV LQFFLRLSFV LSVWLLIIPF ITFWIWRLAF VRSFGEAHRL FLGHLSTTII
0201: LTDCLHGFLL SASIVFIFLG ATSLRDYFRH LRELGGQEAD REDDGDRNAA RAPRRPVAPA NRNFAADANE EDANGAQGIA GAGQLIRRNA ENVAARWEMQ
0301: AARLEAHVEQ MFDGLDDADG AEDVPFDELV GMQGPVFHLV ENAFTVLASN MIFLGVVIFV PFSLGRIILY YLSWILSSAS NPVLSTVMPL TETALSLANI
0401: TLKSAWTAVA NLTPTANDES SLLGQVTEML KANATELSEA ANNLSTTVST DLLKGSSVGT SRLSDVTTLA VGYMFIFSLV FFYLGIVALI RYTRGEPLTL
0501: GRFYGIASIA ETIPSLFRQF VAAMRHLMTM IKVAFLLVIE LGVFPLMCGW WLDVCTIRMF GKSITQRVEF FSVSPLASSL VHWVVGIVYM LQISIFVSLL
0601: RGVLRNGVLY FLRDPADPNY NPFRDLIDDP VHKHARRVLL SVAVYGSLIV MLVYLPVKLA MRMAPSIFPL DISVSDPFTE IPADMLLFQI CIPFAIEHFK
0701: LRTTIKSLLR YWFTAVGWSL GLTDFLLPRP EDNGRQENGN GDQGRQDRFQ APHGVPDRAL VGFAPDNRAR HAAASSNFVE DYDNEEQADP DRYAFVLRIV
0801: LLLVVAWMTL LLFNSALIIV PISLGRALFN SLPLLPITHG IKCNDLYAFV IGSYAIWTAI AGARYSIDQV RTRRVAALMN QIWKWCVIVL KSSALLSIWI
0901: FIIPVLIGLL FELLVIVPMR VPIDESPVFL LYQDWALGLI FLKIWTRLVM LDHMMPLVDE SWRLKFERVR ENGFSRLQGF WVLREIVLPI IMKLLTALCV
1001: PYVLARGVFP ILGYPLLVNS AVYRYAWIGC LGFSLFCFCA KRFHVWFTNL HNSIRDDRYL IGRRLHNFGE EVLQRHNEVE VGGEGEIPLL NGDVEEVADI
1101: GLRHRRGIMQ DA
0101: LLQWLNHSNA RQCEVCKHAF SFSPVYAENA PARLPFQEFV VGMAMKACHV LQFFLRLSFV LSVWLLIIPF ITFWIWRLAF VRSFGEAHRL FLGHLSTTII
0201: LTDCLHGFLL SASIVFIFLG ATSLRDYFRH LRELGGQEAD REDDGDRNAA RAPRRPVAPA NRNFAADANE EDANGAQGIA GAGQLIRRNA ENVAARWEMQ
0301: AARLEAHVEQ MFDGLDDADG AEDVPFDELV GMQGPVFHLV ENAFTVLASN MIFLGVVIFV PFSLGRIILY YLSWILSSAS NPVLSTVMPL TETALSLANI
0401: TLKSAWTAVA NLTPTANDES SLLGQVTEML KANATELSEA ANNLSTTVST DLLKGSSVGT SRLSDVTTLA VGYMFIFSLV FFYLGIVALI RYTRGEPLTL
0501: GRFYGIASIA ETIPSLFRQF VAAMRHLMTM IKVAFLLVIE LGVFPLMCGW WLDVCTIRMF GKSITQRVEF FSVSPLASSL VHWVVGIVYM LQISIFVSLL
0601: RGVLRNGVLY FLRDPADPNY NPFRDLIDDP VHKHARRVLL SVAVYGSLIV MLVYLPVKLA MRMAPSIFPL DISVSDPFTE IPADMLLFQI CIPFAIEHFK
0701: LRTTIKSLLR YWFTAVGWSL GLTDFLLPRP EDNGRQENGN GDQGRQDRFQ APHGVPDRAL VGFAPDNRAR HAAASSNFVE DYDNEEQADP DRYAFVLRIV
0801: LLLVVAWMTL LLFNSALIIV PISLGRALFN SLPLLPITHG IKCNDLYAFV IGSYAIWTAI AGARYSIDQV RTRRVAALMN QIWKWCVIVL KSSALLSIWI
0901: FIIPVLIGLL FELLVIVPMR VPIDESPVFL LYQDWALGLI FLKIWTRLVM LDHMMPLVDE SWRLKFERVR ENGFSRLQGF WVLREIVLPI IMKLLTALCV
1001: PYVLARGVFP ILGYPLLVNS AVYRYAWIGC LGFSLFCFCA KRFHVWFTNL HNSIRDDRYL IGRRLHNFGE EVLQRHNEVE VGGEGEIPLL NGDVEEVADI
1101: GLRHRRGIMQ DA
0001: MEISPADSLS ISGAAASEVV SEPSVSSSSS SSSPNQASPN PFSNMDPAVS TATGSRYVDD DEDEEDVCRI CRNPGDADNP LRYPCACSGS IKFVHQDCLL
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSEYN FVVRIILLLL
0801: VAWVTLLLFN SALIVVPVSL GRALFSAIPI LPITHGIKCN DLYAFVIGTY AFWTTISGAR YAIEHVKSKR TSVLLNQIWK WCGIVFKSSV LLAIWVFIIP
0901: VLIGLLFELL VIVPMRVPVD ESPVFLLYQD WALGLIFLKI WTRLVMLDHM LPIVDDSWRA KFERVREDGF SRLQGLWVLR EIVFPIVMKL LTALCVPYVL
1001: ARGVFPMLGY PLVVNSAVYR FAWIGCLSVS LFCFCAKRCH VWFRNLHNSI RDDRYLIGRR LHNFGEAALA NQNQNQSSED AGDGVLIGRE GDVDNGLRLR
1101: RAIQQEA
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSEYN FVVRIILLLL
0801: VAWVTLLLFN SALIVVPVSL GRALFSAIPI LPITHGIKCN DLYAFVIGTY AFWTTISGAR YAIEHVKSKR TSVLLNQIWK WCGIVFKSSV LLAIWVFIIP
0901: VLIGLLFELL VIVPMRVPVD ESPVFLLYQD WALGLIFLKI WTRLVMLDHM LPIVDDSWRA KFERVREDGF SRLQGLWVLR EIVFPIVMKL LTALCVPYVL
1001: ARGVFPMLGY PLVVNSAVYR FAWIGCLSVS LFCFCAKRCH VWFRNLHNSI RDDRYLIGRR LHNFGEAALA NQNQNQSSED AGDGVLIGRE GDVDNGLRLR
1101: RAIQQEA
Arabidopsis Description
SUD1Probable E3 ubiquitin ligase SUD1 [Source:UniProtKB/Swiss-Prot;Acc:F4JKK0]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.