Factsheet for VIT_03s0063g00080.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g06410.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34100.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70672	Soybean	plasma membrane, plastid	80.36	79.36
KRH50333	Soybean	mitochondrion	80.18	79.18
Solyc01g107880.2.1	Tomato	plasma membrane, plastid	78.29	78.15
PGSC0003DMT400066581	Potato	plasma membrane, plastid	78.2	77.99
AT4G34100.1	Thale cress	cytosol, plastid	74.95	75.09
CDX69024	Canola	cytosol, plastid	74.77	74.91
CDX75396	Canola	cytosol, plastid	74.68	74.68
Bra011487.1-P	Field mustard	cytosol, plastid	74.77	74.31
Os06t0639100-02	Rice	cytosol, peroxisome, plasma membrane	68.11	69.49
KXG20452	Sorghum	cytosol	67.84	69.34
Zm00001d036765_P003	Maize	cytosol	66.67	68.2
Zm00001d046624_P005	Maize	cytosol	67.12	67.67
TraesCS7B01G442100.1	Wheat	cytosol	66.67	67.33
TraesCS7A01G524600.2	Wheat	cytosol	66.58	67.24
HORVU7Hr1G116420.2	Barley	cytosol, mitochondrion, plasma membrane	66.94	64.89
TraesCS7D01G513500.2	Wheat	cytosol	66.85	64.13
Bra017626.1-P	Field mustard	cytosol	48.38	63.55
CDY51866	Canola	cytosol	48.83	63.02
CDY51956	Canola	cytosol	46.58	61.69
CDY62724	Canola	cytosol	46.94	61.58
CDY49274	Canola	cytosol	43.96	61.54
Bra034602.1-P	Field mustard	plasma membrane	42.7	56.97
GSMUA_Achr3P13170_001	Banana	plasma membrane	50.45	56.91
VIT_07s0031g00230.t01	Wine grape	cytosol	50.72	54.45

Protein Annotations

EntrezGene:100262331	wikigene:100262331	MapMan:19.2.1.1.1.1	Gene3D:3.30.40.10	ProteinID:CBI32382	ProteinID:CBI32382.3
UniProt:D7TPF9	EMBL:FN596006	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0019538	GO:GO:0030176	GO:GO:0030433	GO:GO:0046872	GO:GO:1904264
InterPro:IPR011016	InterPro:IPR013083	EntrezGene:LOC100262331	wikigene:LOC100262331	PFAM:PF12906	PFscan:PS51292
PANTHER:PTHR13145	SMART:SM00744	SUPFAM:SSF57850	TIGR:TC62047	TMHMM:TMhelix	UniParc:UPI0001982DE0
ArrayExpress:VIT_03s0063g00080	EnsemblPlantsGene:VIT_03s0063g00080	EnsemblPlants:VIT_03s0063g00080.t01	unigene:Vvi.2803	RefSeq:XP_002282447	RefSeq:XP_002282447.2
RefSeq:XP_010647728.1	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:-:3628552..3643243

Molecular Weight (calculated)

124396.0 Da

IEP (calculated)

5.851

GRAVY (calculated)

0.286

Length

1110 amino acids

Sequence
(BLAST)

0001: MEIAPAVLEA KANENDNPTT VSVDSLKASS SSLSSPRSSP EDETRSPGKY DEEEDEGDVC RICRNPGDAE NPLRYPCACS GSIKFVHQDC LLQWLNHSNA
0101: RQCEVCKYAF SFSPVYAENA PARLPFQEFV VGMAMKACHV LQFFLRLSFV LSVWLLIIPF ITFWIWRFSF VRSFGEAQRL FLSHLSTTVI LTDCLHGFLL
0201: SASIVFIFLG ATSLRDYVRH LRELGGPDAE REDEGERNPR AARRPPGQAN RNFAREGNGE DAGGAQGIAG AGQLDGRNPD NVAVRWEMQA ARLEAHVEQM
0301: FDGLDDADGA EDVPFDELVG MQGPVFHLVE NAFTVLASNM IFLGVVIFLP FSLGRVILHY ISWLFSSATG PVLSTFMPLT ESALSLANIT LKNALTAVTD
0401: LSSESQENGL LGQVAEMLKV NTSGLNETSN NISMPLSADF LKGATIGTSR LSDVTTLAIG YMFVFSLIFF YLGIVALIRY TKGEPLTMGR FYGISSIAET
0501: IPSLFRQFLA AMRHLMTMIK VAFLLVIELG VFPLMCGWWL DVCTIRMFGK TLSQRVQFFS VSPLASSLVH WIVGIVYMLQ ISIFVSLLRG VLRNGVLYFL
0601: RDPADPNYNP FRDLIDDPAH KHARRVLLSV AVYGSLIVML VFLPVKLAMR LAPSIFPLDI VVSDPFTEIP ADMLLFQICI PFAIEHFKLR TTIKSFLHYW
0701: FTAVGWALGL TDFLLPRPDD NGGQENANGE PVRQALYAVP VDEIAQQDQP LGVLEAVDDL NGSIHASGNS NITDEYDADD QSDSEYGFVL RIVLLLVVAW
0801: MTLLIFNSAL IVVPISLGRA LFNGIPLLPI THGIKCNDLY SFIIGSYVIW TALAGVRYSI EHIKTRRAVV LLSQMWKWCV IVIKSSVLLS IWIFVIPVLI
0901: GLLFELLVIV PMRVPVDESP VFLLYQDWAL GLIFLKIWTR LVMLDHMMPL VDESWRIKFE RVREDGFSRL QGLWVLREIV FPIIMKLLTA LCVPYVLARG
1001: VFPVLGYPLV VNSAVYRFAW LGCLCFSLLC FCAKRFHVWF TNLHNSIRDD RYLIGRRLHN YGEDTEGKQN EVEDIPSETQ SANLHGTALI RHDREADIGM
1101: RLRRANRHDA

Best Arabidopsis Sequence Match ( AT4G34100.2 )
(BLAST)

0001: MEISPADSLS ISGAAASEVV SEPSVSSSSS SSSPNQASPN PFSNMDPAVS TATGSRYVDD DEDEEDVCRI CRNPGDADNP LRYPCACSGS IKFVHQDCLL
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSEYN FVVRIILLLL
0801: VAWVTLLLFN SALIVVPVSL GRALFSAIPI LPITHGIKCN DLYAFVIGTY AFWTTISGAR YAIEHVKSKR TSVLLNQIWK WCGIVFKSSV LLAIWVFIIP
0901: VLIGLLFELL VIVPMRVPVD ESPVFLLYQD WALGLIFLKI WTRLVMLDHM LPIVDDSWRA KFERVREDGF SRLQGLWVLR EIVFPIVMKL LTALCVPYVL
1001: ARGVFPMLGY PLVVNSAVYR FAWIGCLSVS LFCFCAKRCH VWFRNLHNSI RDDRYLIGRR LHNFGEAALA NQNQNQSSED AGDGVLIGRE GDVDNGLRLR
1101: RAIQQEA

Arabidopsis Description

SUD1Probable E3 ubiquitin ligase SUD1 [Source:UniProtKB/Swiss-Prot;Acc:F4JKK0]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.