Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d000055_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34100.1 | Zm00001d000055_P001 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG20452 | Sorghum | cytosol | 95.64 | 96.96 |
| Zm00001d036765_P003 | Maize | cytosol | 93.73 | 95.12 |
| Os06t0639100-02 | Rice | cytosol, peroxisome, plasma membrane | 88.65 | 89.71 |
| TraesCS7B01G442100.1 | Wheat | cytosol | 87.01 | 87.17 |
| TraesCS7A01G524600.2 | Wheat | cytosol | 86.74 | 86.9 |
| HORVU7Hr1G116420.2 | Barley | cytosol, mitochondrion, plasma membrane | 86.65 | 83.32 |
| TraesCS7D01G513500.2 | Wheat | cytosol | 86.92 | 82.71 |
| VIT_03s0063g00080.t01 | Wine grape | plasma membrane | 67.67 | 67.12 |
| Solyc01g107880.2.1 | Tomato | plasma membrane, plastid | 67.67 | 67.0 |
| PGSC0003DMT400066581 | Potato | plasma membrane, plastid | 67.67 | 66.94 |
| KRH50333 | Soybean | mitochondrion | 67.67 | 66.28 |
| KRH70672 | Soybean | plasma membrane, plastid | 67.3 | 65.93 |
| AT4G34100.1 | Thale cress | cytosol, plastid | 64.49 | 64.08 |
| CDX69024 | Canola | cytosol, plastid | 64.03 | 63.63 |
| CDX75396 | Canola | cytosol, plastid | 64.12 | 63.6 |
| Bra011487.1-P | Field mustard | cytosol, plastid | 64.12 | 63.2 |
| GSMUA_Achr3P13170_001 | Banana | plasma membrane | 52.59 | 58.84 |
| CDY51866 | Canola | cytosol | 44.41 | 56.86 |
| Bra017626.1-P | Field mustard | cytosol | 42.87 | 55.86 |
| CDY62724 | Canola | cytosol | 42.33 | 55.08 |
| CDY49274 | Canola | cytosol | 39.6 | 54.98 |
| CDY51956 | Canola | cytosol | 41.51 | 54.53 |
| VIT_07s0031g00230.t01 | Wine grape | cytosol | 48.5 | 51.64 |
| Bra034602.1-P | Field mustard | plasma membrane | 37.97 | 50.24 |
Protein Annotations
| MapMan:19.2.1.1.1.1 | Gene3D:3.30.40.10 | UniProt:A0A1D6P435 | ProteinID:AQL04725.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0008270 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016874 | GO:GO:0046872 | InterPro:IPR011016 | InterPro:IPR013083 | PFAM:PF12906 | PFscan:PS51292 |
| PANTHER:PTHR13145 | SMART:SM00744 | SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI000842AEDB | EnsemblPlantsGene:Zm00001d046624 |
| EnsemblPlants:Zm00001d046624_P005 | EnsemblPlants:Zm00001d046624_T005 | InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
Probable E3 ubiquitin ligase SUD1
Coordinates
chr9:+:99409719..99416154
Molecular Weight (calculated)
123975.0 Da
IEP (calculated)
6.138
GRAVY (calculated)
0.282
Length
1101 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAEMAERSVA GELPEEPRPP HGEEDDEEEE EGDVCRICRN RGDEDHPLRY PCACSGSIKF VHQDCLLQWL DHSNSRQCEV CKHAFSFSPV YADNAPTRLP
0101: FQELIVGVGM KACHVFQFIL RLAFVLSVWL MIIPFITYWI WRLTLVRSIG EAQRLFLSHI SAQLILSDCL HGFLLSAIIV LIFLGATSLR DYIRHLRELG
0201: GHDAERDDGG RERHGARAVR RLAGPNNRVP ADGNIDELAE AQGIGAGELL RRNAENVAAR LERLEAQVEQ MLDGLDDADG AEDVPFDELV GMQGPVFHLV
0301: ENAITVLASN AIFLIVVIFV PFSLGRIVLY YLSWFFSSAS TPMLAKMMPF TETAISIAND TLKSALNVVK NFSSDSNNEG VIGHVIEVVT QSLKINATGL
0401: SVIQVTGKSS LMKGTAIGSS YLSDLTTLAV GYMFIFCLVL LYIGSLALLR YARGERFTIG RLYGIATILE AIPSLCRQFF AGMKHIMTMV KVAFLLVIEL
0501: GVFPLMCGWW LDVCTLKMLG TTIAQRIEFF TVSPLASSSI HWLVGIVYML QISIFVSLLR GVLRNGVLYF LRDPADPNYN PFRDLIDDPV HKHARRVLLS
0601: VAVYGSLIVM LVFLPVKLAM RVAPSIFPLD ITIFDPFTEI PVDVLLFQIC IPFAIEHFKP RATIKSLLHH WFAVVGWGLG LTDFLLPKPE ENGGQENWNG
0701: RAERRDRGHG GQEMVAPQVE QLMIQHVAAE HNDRGNANEA NDVTEESDVD DQGDSEYGFV LRIVLLLVLA WMTLLIFNAG MIVIPISLGR LVFEGVPRLP
0801: ITHGIKCNGN LHLYNKFADT FWNSLSDLFS FSIGCYILWS VAAGTRYAID YIRSRQLGFL VQQICKWCSI VLKSSFLLSI WIFVIPVLIG LLFELLVIVP
0901: MRVPIDESPV FLLYQDWALG LIFLKIWTRL VMLDQMAPLV DESWRSKFER VRDDGFSRLR GLWVLHEIIM PILTKLLTAL CVPYVLARGI FPVLGYPLIV
1001: NSAVYRFAWL GCLIFSALFF CGKRFHVWFT NLHNSIRDDR YLIGRRLHNF GEDTPEPSES GATIGSDDQD QALVLRDQEE EVGLRMRRNN MRANQQPRLA
1101: F
0101: FQELIVGVGM KACHVFQFIL RLAFVLSVWL MIIPFITYWI WRLTLVRSIG EAQRLFLSHI SAQLILSDCL HGFLLSAIIV LIFLGATSLR DYIRHLRELG
0201: GHDAERDDGG RERHGARAVR RLAGPNNRVP ADGNIDELAE AQGIGAGELL RRNAENVAAR LERLEAQVEQ MLDGLDDADG AEDVPFDELV GMQGPVFHLV
0301: ENAITVLASN AIFLIVVIFV PFSLGRIVLY YLSWFFSSAS TPMLAKMMPF TETAISIAND TLKSALNVVK NFSSDSNNEG VIGHVIEVVT QSLKINATGL
0401: SVIQVTGKSS LMKGTAIGSS YLSDLTTLAV GYMFIFCLVL LYIGSLALLR YARGERFTIG RLYGIATILE AIPSLCRQFF AGMKHIMTMV KVAFLLVIEL
0501: GVFPLMCGWW LDVCTLKMLG TTIAQRIEFF TVSPLASSSI HWLVGIVYML QISIFVSLLR GVLRNGVLYF LRDPADPNYN PFRDLIDDPV HKHARRVLLS
0601: VAVYGSLIVM LVFLPVKLAM RVAPSIFPLD ITIFDPFTEI PVDVLLFQIC IPFAIEHFKP RATIKSLLHH WFAVVGWGLG LTDFLLPKPE ENGGQENWNG
0701: RAERRDRGHG GQEMVAPQVE QLMIQHVAAE HNDRGNANEA NDVTEESDVD DQGDSEYGFV LRIVLLLVLA WMTLLIFNAG MIVIPISLGR LVFEGVPRLP
0801: ITHGIKCNGN LHLYNKFADT FWNSLSDLFS FSIGCYILWS VAAGTRYAID YIRSRQLGFL VQQICKWCSI VLKSSFLLSI WIFVIPVLIG LLFELLVIVP
0901: MRVPIDESPV FLLYQDWALG LIFLKIWTRL VMLDQMAPLV DESWRSKFER VRDDGFSRLR GLWVLHEIIM PILTKLLTAL CVPYVLARGI FPVLGYPLIV
1001: NSAVYRFAWL GCLIFSALFF CGKRFHVWFT NLHNSIRDDR YLIGRRLHNF GEDTPEPSES GATIGSDDQD QALVLRDQEE EVGLRMRRNN MRANQQPRLA
1101: F
0001: MEISPADSLS ISGAAASEVV SEPSVSSSSS SSSPNQASPN PFSNMDPAVS TATGSRYVDD DEDEEDVCRI CRNPGDADNP LRYPCACSGS IKFVHQDCLL
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSEYN FVVRIILLLL
0801: VAWVTLLLFN SALIVVPVSL GRALFSAIPI LPITHGIKCN DLYAFVIGTY AFWTTISGAR YAIEHVKSKR TSVLLNQIWK WCGIVFKSSV LLAIWVFIIP
0901: VLIGLLFELL VIVPMRVPVD ESPVFLLYQD WALGLIFLKI WTRLVMLDHM LPIVDDSWRA KFERVREDGF SRLQGLWVLR EIVFPIVMKL LTALCVPYVL
1001: ARGVFPMLGY PLVVNSAVYR FAWIGCLSVS LFCFCAKRCH VWFRNLHNSI RDDRYLIGRR LHNFGEAALA NQNQNQSSED AGDGVLIGRE GDVDNGLRLR
1101: RAIQQEA
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSEYN FVVRIILLLL
0801: VAWVTLLLFN SALIVVPVSL GRALFSAIPI LPITHGIKCN DLYAFVIGTY AFWTTISGAR YAIEHVKSKR TSVLLNQIWK WCGIVFKSSV LLAIWVFIIP
0901: VLIGLLFELL VIVPMRVPVD ESPVFLLYQD WALGLIFLKI WTRLVMLDHM LPIVDDSWRA KFERVREDGF SRLQGLWVLR EIVFPIVMKL LTALCVPYVL
1001: ARGVFPMLGY PLVVNSAVYR FAWIGCLSVS LFCFCAKRCH VWFRNLHNSI RDDRYLIGRR LHNFGEAALA NQNQNQSSED AGDGVLIGRE GDVDNGLRLR
1101: RAIQQEA
Arabidopsis Description
SUD1Probable E3 ubiquitin ligase SUD1 [Source:UniProtKB/Swiss-Prot;Acc:F4JKK0]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.