CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017626.1-P	Field mustard	cytosol	88.27	82.84
CDY62724	Canola	cytosol	60.66	56.86
CDY51956	Canola	cytosol	59.52	56.32
CDY51866	Canola	cytosol	59.65	55.0
CDX69024	Canola	cytosol, plastid	68.85	49.28
CDX75396	Canola	cytosol, plastid	68.73	49.1
KRH70672	Soybean	plasma membrane, plastid	62.55	44.13
VIT_03s0063g00080.t01	Wine grape	plasma membrane	61.54	43.96
KRH50333	Soybean	mitochondrion	62.04	43.77
PGSC0003DMT400066581	Potato	plasma membrane, plastid	61.29	43.67
Solyc01g107880.2.1	Tomato	plasma membrane, plastid	61.16	43.62
Os06t0639100-02	Rice	cytosol, peroxisome, plasma membrane	55.23	40.26
KXG20452	Sorghum	cytosol	54.98	40.15
Zm00001d036765_P003	Maize	cytosol	54.73	40.0
Zm00001d046624_P005	Maize	cytosol	54.98	39.6
TraesCS7A01G524600.2	Wheat	cytosol	54.73	39.49
TraesCS7B01G442100.1	Wheat	cytosol	54.48	39.31
HORVU7Hr1G116420.2	Barley	cytosol, mitochondrion, plasma membrane	54.22	37.55
TraesCS7D01G513500.2	Wheat	cytosol	54.73	37.51
GSMUA_Achr3P13170_001	Banana	plasma membrane	44.89	36.18
CDX68876	Canola	cytosol	10.34	30.6
CDX68874	Canola	plasma membrane	12.11	27.43
CDY05287	Canola	cytosol	24.97	23.68
CDX68877	Canola	cytosol	23.08	22.96
CDX75270	Canola	cytosol	24.21	22.72
CDX68875	Canola	plasma membrane	5.93	22.17
CDY24673	Canola	cytosol	24.97	21.0
CDY05286	Canola	cytosol	24.97	20.8
CDX75269	Canola	cytosol, peroxisome, plasma membrane	25.35	20.57
CDX74093	Canola	cytosol	25.09	20.1
CDY70269	Canola	plastid	16.77	18.89
CDY08527	Canola	plasma membrane	7.31	17.37
CDY24672	Canola	extracellular	2.77	16.3

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:19.2.1.1.1.1	Gene3D:3.30.40.10	GO:A0A078IIS3
UniProt:A0A078IIS3	EnsemblPlants:CDY49274	ProteinID:CDY49274	ProteinID:CDY49274.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00092689001
InterPro:IPR011016	InterPro:IPR013083	PFAM:PF12906	PFscan:PS51292	PANTHER:PTHR13145	SMART:SM00744
SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI0004EE0257	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

BnaA03g50870DBnaA03g50870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IIS3]

Coordinates

chrLK032822:+:46633..49938

Molecular Weight (calculated)

89484.3 Da

IEP (calculated)

6.774

GRAVY (calculated)

0.490

Length

793 amino acids

Sequence
(BLAST)

001: MDYATKVSIH IDDEDDEEEV CRICRNPGDA DTPLRYPCAC SGSIKFVHED CLLQWLSFSK ARHCEVCKHS FSFSPLYAEN APTRLPFHEF AVGVAMKACN
101: SRLPRLSFVL CVWLLTVPFV TIMFVIREAA SFRDYFRHLR VSLYELVGLE GPLFRLVENA FSVLASNMLF IGGVIFVPFT LGRVILYHFA DTGLSLRNIL
201: TLKMVKVNGS ELSGAINNTL FVAAGLSSTL YDVTTLTAGY MFIVFLVLIY LGITALIRYF KDEPLTVEGV YGIAWIVETV SPLLGQFLVV MRLGIRLASF
301: LVVMFGVFPL MCGWWLDVCT VTMFGQTMSY RLQFLSVSPL ASSLVHWVVG AVYDWYSLIL ENLLRQVLRP EVLYFLYGPE DDDDEETIRY LIHDPVHKIA
401: RDGFLSGAQY GSWIVLLVFL PVKLAIWMAP SVFPLDISVS DPFTEIPAGI LLLTICTPFI IEHFSIQTTV DNRNDEPGRQ NIEQVLHVVE PDMAMAAHPA
501: PDDPKRSLLQ EYNLQLRITL LLLVASVTLL LVHSTLIVAP VSLGRTLFNA IPVLPRTHGI KCNDLYAFFI GTYVFWTTIS GAMYAVEHVK SERSSVLLSQ
601: IWKWCGIVIK SSVLLGIWLL VIVPIRVPVD ESPVFILYQD WALGLIILKI WTRLMVDDSW RAKFERVKED GFSRLQGLWV LREIVFPVVM KLLTALCVPY
701: VLARGVFPML GCTLVVNSAV YRFAWIGYLS ASLLCFCVKR CQVWFRNLHN SIRDDRYIIG QRLHNSGEEA AALAIKKNQS SEVAGDGGLR RAI

Best Arabidopsis Sequence Match ( AT4G34100.2 )
(BLAST)

0001: MEISPADSLS ISGAAASEVV SEPSVSSSSS SSSPNQASPN PFSNMDPAVS TATGSRYVDD DEDEEDVCRI CRNPGDADNP LRYPCACSGS IKFVHQDCLL
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSEYN FVVRIILLLL
0801: VAWVTLLLFN SALIVVPVSL GRALFSAIPI LPITHGIKCN DLYAFVIGTY AFWTTISGAR YAIEHVKSKR TSVLLNQIWK WCGIVFKSSV LLAIWVFIIP
0901: VLIGLLFELL VIVPMRVPVD ESPVFLLYQD WALGLIFLKI WTRLVMLDHM LPIVDDSWRA KFERVREDGF SRLQGLWVLR EIVFPIVMKL LTALCVPYVL
1001: ARGVFPMLGY PLVVNSAVYR FAWIGCLSVS LFCFCAKRCH VWFRNLHNSI RDDRYLIGRR LHNFGEAALA NQNQNQSSED AGDGVLIGRE GDVDNGLRLR
1101: RAIQQEA

Arabidopsis Description

SUD1Probable E3 ubiquitin ligase SUD1 [Source:UniProtKB/Swiss-Prot;Acc:F4JKK0]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.