CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029597.1-P	Field mustard	cytosol	97.14	97.03
CDY05286	Canola	cytosol	91.62	90.76
CDY05287	Canola	cytosol	47.19	53.23
CDX74093	Canola	cytosol	53.34	50.81
CDY08527	Canola	plasma membrane	15.48	43.71
CDX75270	Canola	cytosol	37.12	41.42
CDX68877	Canola	cytosol	33.51	39.65
CDX68874	Canola	plasma membrane	14.32	38.57
CDX68875	Canola	plasma membrane	8.17	36.32
CDX75269	Canola	cytosol, peroxisome, plasma membrane	36.27	35.01
CDX68876	Canola	cytosol	9.65	33.96
GSMUA_Achr1P26090_001	Banana	cytosol, plastid	3.61	30.09
Solyc01g020190.2.1	Tomato	plastid	3.71	28.0
CDY70269	Canola	plastid	19.62	26.28
CDY51866	Canola	cytosol	22.8	25.0
CDY49274	Canola	cytosol	21.0	24.97
CDY51956	Canola	cytosol	22.16	24.94
CDY62724	Canola	cytosol	22.27	24.82
TraesCS1A01G328300.1	Wheat	cytosol	17.5	23.24
TraesCS1D01G330800.1	Wheat	cytosol	17.39	23.23
TraesCS1B01G342100.2	Wheat	cytosol	17.18	23.01
HORVU5Hr1G098410.4	Barley	plasma membrane	18.66	22.22
CDX69024	Canola	cytosol, plastid	24.92	21.21
CDX75396	Canola	cytosol, plastid	24.92	21.17
TraesCS1B01G465300.1	Wheat	cytosol	17.6	21.09
TraesCS7D01G348000.2	Wheat	cytosol	19.94	20.84
TraesCS7A01G340400.1	Wheat	cytosol	19.72	20.6
TraesCS7B01G252000.1	Wheat	cytosol	19.51	20.35
GSMUA_Achr1P26100_001	Banana	plasma membrane	21.0	20.16
HORVU1Hr1G093800.1	Barley	cytosol	16.54	20.16
TraesCS1D01G440100.2	Wheat	cytosol, nucleus, plasma membrane	17.39	20.1
TraesCS1B01G465500.1	Wheat	cytosol	14.0	19.91
TraesCS1D01G439900.1	Wheat	cytosol	15.91	19.84
HORVU7Hr1G083770.3	Barley	cytosol	19.62	19.81
TraesCS5D01G415200.1	Wheat	plasma membrane	14.32	19.77
TraesCS1A01G430800.1	Wheat	cytosol	13.79	19.67
TraesCS1B01G465700.1	Wheat	cytosol	16.86	19.65
CDY24672	Canola	extracellular	2.65	18.52
HORVU1Hr1G093830.1	Barley	plasma membrane	14.74	17.94
Os08t0100400-01	Rice	cytosol	11.45	17.7
TraesCS1B01G465200.1	Wheat	plasma membrane	6.79	14.88
TraesCS1A01G430500.1	Wheat	plasma membrane	6.57	14.42
TraesCS5A01G405100.1	Wheat	plasma membrane	5.51	14.33

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:19.2.1.1.1.1	Gene3D:3.30.40.10	GO:A0A078GJ99
UniProt:A0A078GJ99	EnsemblPlants:CDY24673	ProteinID:CDY24673	ProteinID:CDY24673.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00027051001
InterPro:IPR011016	InterPro:IPR013083	PFAM:PF12906	PFscan:PS51292	PANTHER:PTHR13145	SMART:SM00744
SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI0004EE89CF	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

BnaA05g30720DBnaA05g30720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GJ99]

Coordinates

chrLK032162:+:285753..289294

Molecular Weight (calculated)

107914.0 Da

IEP (calculated)

8.093

GRAVY (calculated)

0.615

Length

943 amino acids

Sequence
(BLAST)

001: MDVSPEAGSY DEVFSAEDED QCRICRSPEE PGNPLRYPCL CRGSIKFVHQ DCLRTWLIRR GNNKCEVCGR SYSFVPIYSE NAPERLSCDE FLLGVLSRAG
101: RYLKMIVPWI VLILLNCYFV SLHPWGQVAA AEFQNDFGMS RKFACFSTGL LYIVFSVCLM TVIALVKLEV GDVNVRRFIG NGGGLQFLLK YMKILFDWYC
201: HKLIHFLGEP PRLIFLPPEA PLHEFGVIRR VLFFLDDDSF AILAISVYVA ILVVLLPVWI GRIGGSYLSV NSPVVLGYII MLSVWFAYVG FLFALHQNLF
301: PVIVRWLSLG VHFVAVKLPC LLWVFSVKSC KRLQSLVGFG IRQASLPAIF HWLSLGFHFI TVRLPSFLWV SSEMVCKSFQ SLVRLRTISI DRQATLPAIF
401: QWFSIGFHFI TVTLPRFLWV SSAVACVILS VLKEAFVLCF KIGVLPWIIG CWFEICTSPL FGTLSPRSFE TVSHFPCMMF LRWSSGIVCL LVAQSCMYRI
501: QEIVHKRAIW YLLDVTDPDY KITKMNFGHT FFALASHGIL LVILFHLPIR AITLISPSFF PLELWVSDEE VSAAAHSIYF HLLSSSPKWL IGLVKPAMEL
601: MVQNWIITVS SWLDLSDYLL VADQNVRPRM QPRRRWLLFC SVAEGSLVSL HGSKNAEDDT NDQRDNRFLL RITLMLLLAA LSMFVVSTAF MALPILLGRG
701: FLESLSFIML RVGLKRDDLL AFWIGYCIIG QTYTITCFVY DEIQKGRFDL LLKDVFMWIR NGLLFSIWIS VIPGLLGLLI ELMIIIPLRV PLDESPVHFL
801: IQDWLIGVFV LHTWVFLTML TPINWFATEA WLRKLERIRN VGLNRVPSTW LLRDVIGSII NTLLTTLTIP YLLVKFLFPL LGVSESVTSA TERLIWPALL
901: ALLAGWIIAR ITHDFIIYVH QLVFNERYLV GEILNNVTEE ERT

Best Arabidopsis Sequence Match ( AT3G06710.1 )
(BLAST)

001: MRASPYVRMV VPWAMAFILN TYCLSLHPLG QEVVVGFKRD YGMSTKSACF LNGLLYNGHL VFFMRIPIHE PIIARHPAGF QADILIKNVL GDGFVLVLWK
101: YNKIVCEWYY SLLQSFFGEP PRLVGVAVHE LGAIGRLLFF LDNKSFDALT ISICVSFFFI LLPFSFRWIA IAIVGGGGLF ENSPVILGYM MTLSIPFAYL
201: GIFLTLRQIS FPAIVRWFSL GYHFITKKLS CLLSKNLVSC QLFRD

Arabidopsis Description

E3 ubiquitin ligase [Source:UniProtKB/TrEMBL;Acc:Q6E260]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.