Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G342100.2 | Wheat | cytosol | 89.86 | 90.62 |
| TraesCS1D01G330800.1 | Wheat | cytosol | 89.86 | 90.37 |
| TraesCS1A01G430800.1 | Wheat | cytosol | 40.42 | 43.42 |
| TraesCS7A01G340400.1 | Wheat | cytosol | 52.54 | 41.31 |
| TraesCS5A01G405100.1 | Wheat | plasma membrane | 19.01 | 37.19 |
| Os08t0100400-01 | Rice | cytosol | 29.72 | 34.59 |
| TraesCS1A01G430500.1 | Wheat | plasma membrane | 20.0 | 33.02 |
| GSMUA_Achr1P26090_001 | Banana | cytosol, plastid | 5.07 | 31.86 |
| Solyc01g020190.2.1 | Tomato | plastid | 4.79 | 27.2 |
| Bra029598.1-P | Field mustard | cytosol | 8.31 | 23.98 |
| CDX68876 | Canola | cytosol | 9.01 | 23.88 |
| Bra011370.1-P | Field mustard | cytosol | 18.73 | 22.97 |
| CDX68874 | Canola | plasma membrane | 10.99 | 22.29 |
| AT4G32670.1 | Thale cress | cytosol | 25.07 | 20.7 |
| TraesCS7A01G524600.2 | Wheat | cytosol | 31.41 | 20.29 |
| Bra001210.1-P | Field mustard | cytosol | 26.2 | 20.09 |
| CDY05287 | Canola | cytosol | 23.1 | 19.62 |
| CDX75270 | Canola | cytosol | 23.1 | 19.41 |
| GSMUA_Achr1P26100_001 | Banana | plasma membrane | 26.06 | 18.84 |
| CDX74093 | Canola | cytosol | 25.92 | 18.59 |
| CDX68877 | Canola | cytosol | 20.56 | 18.32 |
| CDX68875 | Canola | plasma membrane | 5.35 | 17.92 |
| Bra029597.1-P | Field mustard | cytosol | 23.8 | 17.9 |
| CDY24673 | Canola | cytosol | 23.24 | 17.5 |
| CDY05286 | Canola | cytosol | 23.24 | 17.33 |
| Bra011369.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 20.99 | 16.87 |
| CDX75269 | Canola | cytosol, peroxisome, plasma membrane | 20.85 | 15.15 |
| CDY24672 | Canola | extracellular | 2.68 | 14.07 |
| CDY70269 | Canola | plastid | 13.24 | 13.35 |
| CDY08527 | Canola | plasma membrane | 4.79 | 10.18 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G328300.1 | EnsemblPlantsGene:TraesCS1A01G328300 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 |
| InterPro:IPR011016 | InterPro:IPR013083 | InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR13145 | PFAM:PF12906 |
| PFscan:PS51292 | SEG:seg | SMART:SM00744 | SUPFAM:SSF57850 | TIGR:cd16702 | TMHMM:TMhelix |
| MapMan:19.2.1.1.1.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1A:+:517408837..517413274
Molecular Weight (calculated)
78302.6 Da
IEP (calculated)
8.850
GRAVY (calculated)
0.525
Length
710 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAGASPPET ALSAADGPGD EDGEEGEGEE EQCRICRLPA EAGRPLRHPC ACRGSIRFVH DDCQLRWLAT RQGPRCELCN NDISIRPVYA ADAPARLPVS
101: EFIAGFSHKL MGLLLLLICL VPALVMHLIT LGAWLFALAR SFAQVHYLLS LRLRPSVAST VAQTAIFILR LPGIILRGVV GSIPFVALIV AQTAVFILRL
201: PGIFLRGVVR SIPAANFCLN LLSAKILHPV FFGWALDICT SEMFGATMSQ RFKLMLASSF ASTVLHWYFG CIFWHLGLRF FRLLDKILRP GIAIPFVHYE
301: AHEPFYKFYF KKLHVPFVGI ISMVLVILVP IQIGGLLVPE LFPFHITYFS CGAKGISFWQ APRNYVDSVS HALLLKFLID NTKTLVYLEW LVKKVTQYSF
401: VTAGHALGLS DSLSIWPVGA SGHDEIGSSV APEDQYDRIN EAKDGRRSVA VATILSLVLA WLTIVVFNLA VLIFPISIGR AITRLPLAGG LKSDDMLALA
501: IGFGTISTVI AASRDSFAYV TSGRTDLLAL NRYLVVFLWL VIAPFLTGLL VDLSLISPFT GLADDVPVVG LSYYWSLGCL SLKIWGKQAR RTRARCLRAY
601: FIDERWGPKL NQAKADWDSG IAPMWWFLQD VCIPIVTKLL AALGVPYVLA KGVFPRFGYS VAMNSAVYRF VWLGSLGFYL AKALCAKLHD SIRDARYVVG
701: QRLEDVADGS
101: EFIAGFSHKL MGLLLLLICL VPALVMHLIT LGAWLFALAR SFAQVHYLLS LRLRPSVAST VAQTAIFILR LPGIILRGVV GSIPFVALIV AQTAVFILRL
201: PGIFLRGVVR SIPAANFCLN LLSAKILHPV FFGWALDICT SEMFGATMSQ RFKLMLASSF ASTVLHWYFG CIFWHLGLRF FRLLDKILRP GIAIPFVHYE
301: AHEPFYKFYF KKLHVPFVGI ISMVLVILVP IQIGGLLVPE LFPFHITYFS CGAKGISFWQ APRNYVDSVS HALLLKFLID NTKTLVYLEW LVKKVTQYSF
401: VTAGHALGLS DSLSIWPVGA SGHDEIGSSV APEDQYDRIN EAKDGRRSVA VATILSLVLA WLTIVVFNLA VLIFPISIGR AITRLPLAGG LKSDDMLALA
501: IGFGTISTVI AASRDSFAYV TSGRTDLLAL NRYLVVFLWL VIAPFLTGLL VDLSLISPFT GLADDVPVVG LSYYWSLGCL SLKIWGKQAR RTRARCLRAY
601: FIDERWGPKL NQAKADWDSG IAPMWWFLQD VCIPIVTKLL AALGVPYVLA KGVFPRFGYS VAMNSAVYRF VWLGSLGFYL AKALCAKLHD SIRDARYVVG
701: QRLEDVADGS
0001: MEISPADSLS ISGAAASEVV SEPSVSSSSS SSSPNQASPN PFSNMDPAVS TATGSRYVDD DEDEEDVCRI CRNPGDADNP LRYPCACSGS IKFVHQDCLL
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSDRY NFVVRIILLL
0801: LVAWVTLLLF NSALIVVPVS LGRALFSAIP ILPITHGIKC NDLYAFVIGT YAFWTTISGA RYAIEHVKSK RTSVLLNQIW KWCGIVFKSS VLLAIWVFII
0901: PVLIGLLFEL LVIVPMRVPV DESPVFLLYQ DWALGLIFLK IWTRLVMLDH MLPIVDDSWR AKFERVREDG FSRLQGLWVL REIVFPIVMK LLTALCVPYV
1001: LARGVFPMLG YPLVVNSAVY RFAWIGCLSV SLFCFCAKRC HVWFRNLHNS IRDDRYLIGR RLHNFGEAAL ANQNQNQSSE DAGDGVLIGR EGDVDNGLRL
1101: RRAIQQEA
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSDRY NFVVRIILLL
0801: LVAWVTLLLF NSALIVVPVS LGRALFSAIP ILPITHGIKC NDLYAFVIGT YAFWTTISGA RYAIEHVKSK RTSVLLNQIW KWCGIVFKSS VLLAIWVFII
0901: PVLIGLLFEL LVIVPMRVPV DESPVFLLYQ DWALGLIFLK IWTRLVMLDH MLPIVDDSWR AKFERVREDG FSRLQGLWVL REIVFPIVMK LLTALCVPYV
1001: LARGVFPMLG YPLVVNSAVY RFAWIGCLSV SLFCFCAKRC HVWFRNLHNS IRDDRYLIGR RLHNFGEAAL ANQNQNQSSE DAGDGVLIGR EGDVDNGLRL
1101: RRAIQQEA
Arabidopsis Description
SUD1Probable E3 ubiquitin ligase SUD1 [Source:UniProtKB/Swiss-Prot;Acc:F4JKK0]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.