CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24673	Canola	cytosol	90.76	91.62
CDY05287	Canola	cytosol	46.53	52.99
CDX74093	Canola	cytosol	53.15	51.11
CDY08527	Canola	plasma membrane	15.34	43.71
CDX75270	Canola	cytosol	37.29	42.01
CDX68877	Canola	cytosol	33.61	40.15
CDX68874	Canola	plasma membrane	14.39	39.14
CDX68875	Canola	plasma membrane	8.3	37.26
CDX75269	Canola	cytosol, peroxisome, plasma membrane	36.03	35.11
CDX68876	Canola	cytosol	9.45	33.58
GSMUA_Achr1P26090_001	Banana	cytosol, plastid	3.47	29.2
Solyc01g020190.2.1	Tomato	plastid	3.68	28.0
CDY70269	Canola	plastid	19.12	25.85
CDY51866	Canola	cytosol	22.9	25.35
CDY49274	Canola	cytosol	20.8	24.97
CDY62724	Canola	cytosol	22.06	24.82
CDY51956	Canola	cytosol	21.74	24.7
TraesCS1A01G328300.1	Wheat	cytosol	17.33	23.24
TraesCS1D01G330800.1	Wheat	cytosol	17.12	23.09
TraesCS1B01G342100.2	Wheat	cytosol	17.02	23.01
HORVU5Hr1G098410.4	Barley	plasma membrane	17.96	21.59
TraesCS1B01G465300.1	Wheat	cytosol	17.54	21.22
CDX69024	Canola	cytosol, plastid	24.58	21.12
CDX75396	Canola	cytosol, plastid	24.58	21.08
TraesCS1D01G439900.1	Wheat	cytosol	16.6	20.9
TraesCS7D01G348000.2	Wheat	cytosol	19.75	20.84
TraesCS1B01G465500.1	Wheat	cytosol	14.39	20.66
TraesCS7A01G340400.1	Wheat	cytosol	19.54	20.6
TraesCS1A01G430800.1	Wheat	cytosol	14.18	20.42
TraesCS7B01G252000.1	Wheat	cytosol	19.33	20.35
HORVU1Hr1G093800.1	Barley	cytosol	16.49	20.28
GSMUA_Achr1P26100_001	Banana	plasma membrane	20.8	20.16
TraesCS1D01G440100.2	Wheat	cytosol, nucleus, plasma membrane	17.12	19.98
TraesCS1B01G465700.1	Wheat	cytosol	16.91	19.9
HORVU7Hr1G083770.3	Barley	cytosol	19.33	19.7
TraesCS5D01G415200.1	Wheat	plasma membrane	14.08	19.62
CDY24672	Canola	extracellular	2.63	18.52
HORVU1Hr1G093830.1	Barley	plasma membrane	15.02	18.45
Os08t0100400-01	Rice	cytosol	11.55	18.03
TraesCS1B01G465200.1	Wheat	plasma membrane	7.14	15.81
TraesCS1A01G430500.1	Wheat	plasma membrane	6.83	15.12
TraesCS5A01G405100.1	Wheat	plasma membrane	5.46	14.33

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:19.2.1.1.1.1	Gene3D:3.30.40.10	GO:A0A078EVJ0
EnsemblPlants:CDY05286	ProteinID:CDY05286	ProteinID:CDY05286.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0008270
EnsemblPlantsGene:GSBRNA2T00120113001	InterPro:IPR011016	InterPro:IPR013083	PFAM:PF12906	PFscan:PS51292	PANTHER:PTHR13145
SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI0004EB585F	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

BnaC05g45170D

Coordinates

chrLK031960:-:884056..887801

Molecular Weight (calculated)

108950.0 Da

IEP (calculated)

8.472

GRAVY (calculated)

0.591

Length

952 amino acids

Sequence
(BLAST)

001: MEVSPEAGSY DEIFSAEDED QCRICRSPEE PENPLRYPCL CRGSIKYVHQ DCLRTWLSRR GNNKCEVCGR SYSFVPIYSE NAPERLSCDE FLLGVLSRLG
101: RYLNLIVPWI ALILLNSYFV SLHPWGQVVA AEFQSEFGMS RKLAYFSVGL LYIAFSVCCM TVIALVKLEV GDVNVRRFIG NGGGLQFLSK YMKILFDCYC
201: HKLIRFLGRP PRLMVLPPEA PLHEFGVIRR VLFFLDDDAF AILAISVYVA ILVVLLPVWI GRIGGSYLSG NSTVVLGYMI MLSVWFAYVG FLFALHQNLF
301: PVIVRWLLLG VHFVAVKLPC LLWVFSVKSC KRLQSLVGFG IRQASLPAIF HWLSLGFHFI TVRLPSFLWV SSEMVCKSFQ SLVRLRIISI HRQATLPAIF
401: QWFSIGFHFI TVTLPRFLWV SLAVACVILS VLKEAFVLCF KIGVLPWIIG CWLGICTSPL FGTLFSQSSE TVSHFPCMMI LRWSSGIVCL LVAESCMNRI
501: QKIVHKRAIW YLLDVTDPDY KITKMNFGHT FFAVACHGLL LVILFHLPIR AITFISPSFF PLELWVSDEN VSAAAHSFYF HLLSSSPKWL IGLVKPAMEL
601: MVQNWIITVS SCLDLSDYLL VVPRREEFHR AGQNVRPMMQ PRRRLLLFYS IAEGSLVTLH GSQNAEDDTN DQRDNRFRLR IALMMMLAAL SMFVVSTAFM
701: ALPILVGRGF LESVSFIMLR IGLKRDDLLA FWIGYSIIGQ TYNITCFVYD EIQKGRFDLL LKDVFMWIRN GLLFSIWISV LPGLLGLLIE LMIFIPLRVP
801: LDESPVHFLI QDWLIGVFVL HTWVFLTMLT PINWFATEAW LRKLERIRNV GLNRLPPTWL LRDVIGSIIN TLLTTLSIPY LLVKFLFPLL GVSESVTSAT
901: ERLIWPALLA LLAVWIIARI TRDFIIYVHQ LVFNERYLVG EILNNVTEEE RT

Best Arabidopsis Sequence Match ( AT3G06710.1 )
(BLAST)

001: MRASPYVRMV VPWAMAFILN TYCLSLHPLG QEVVVGFKRD YGMSTKSACF LNGLLYNGHL VFFMRIPIHE PIIARHPAGF QADILIKNVL GDGFVLVLWK
101: YNKIVCEWYY SLLQSFFGEP PRLVGVAVHE LGAIGRLLFF LDNKSFDALT ISICVSFFFI LLPFSFRWIA IAIVGGGGLF ENSPVILGYM MTLSIPFAYL
201: GIFLTLRQIS FPAIVRWFSL GYHFITKKLS CLLSKNLVSC QLFRD

Arabidopsis Description

E3 ubiquitin ligase [Source:UniProtKB/TrEMBL;Acc:Q6E260]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.