Factsheet for GSMUA_Achr1P26090_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
nucleus 1
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g020190.2.1	Tomato	plastid	49.56	44.8
CDX68876	Canola	cytosol	34.51	14.55
Bra029598.1-P	Field mustard	cytosol	30.97	14.23
Os08t0100400-01	Rice	cytosol	29.2	5.41
TraesCS1B01G342100.2	Wheat	cytosol	32.74	5.26
TraesCS1D01G330800.1	Wheat	cytosol	32.74	5.24
TraesCS1A01G328300.1	Wheat	cytosol	31.86	5.07
TraesCS1A01G430800.1	Wheat	cytosol	28.32	4.84
Bra011370.1-P	Field mustard	cytosol	24.78	4.84
HORVU5Hr1G098410.4	Barley	plasma membrane	33.63	4.8
TraesCS1B01G465500.1	Wheat	cytosol	27.43	4.68
TraesCS7B01G252000.1	Wheat	cytosol	36.28	4.54
TraesCS7D01G348000.2	Wheat	cytosol	35.4	4.43
TraesCS7A01G340400.1	Wheat	cytosol	35.4	4.43
CDY05287	Canola	cytosol	32.74	4.43
TraesCS1D01G439900.1	Wheat	cytosol	29.2	4.37
TraesCS1B01G465300.1	Wheat	cytosol	29.2	4.19
HORVU7Hr1G083770.3	Barley	cytosol	34.51	4.18
HORVU1Hr1G093800.1	Barley	cytosol	28.32	4.13
CDY24673	Canola	cytosol	30.09	3.61
Bra029597.1-P	Field mustard	cytosol	30.09	3.6
TraesCS1B01G465700.1	Wheat	cytosol	25.66	3.58
CDX68877	Canola	cytosol	24.78	3.51
CDY05286	Canola	cytosol	29.2	3.47
TraesCS1D01G440100.2	Wheat	cytosol, nucleus, plasma membrane	24.78	3.43
CDX75270	Canola	cytosol	24.78	3.31
AT4G32670.1	Thale cress	cytosol	24.78	3.26
Bra001210.1-P	Field mustard	cytosol	25.66	3.13
CDX74093	Canola	cytosol	26.55	3.03
HORVU1Hr1G093830.1	Barley	plasma membrane	16.81	2.45
Bra011369.1-P	Field mustard	cytosol, peroxisome, plasma membrane	16.81	2.15
CDX75269	Canola	cytosol, peroxisome, plasma membrane	15.04	1.74
CDY70269	Canola	plastid	7.96	1.28
GSMUA_Achr3P13170_001	Banana	plasma membrane	10.62	1.22
CDX68874	Canola	plasma membrane	2.65	0.86
CDY24672	Canola	extracellular	0.88	0.74
CDX68875	Canola	plasma membrane	0.88	0.47
CDY08527	Canola	plasma membrane	0.88	0.3
TraesCS5D01G415200.1	Wheat	plasma membrane	1.77	0.29
TraesCS5A01G405100.1	Wheat	plasma membrane	0.88	0.28
TraesCS1B01G465200.1	Wheat	plasma membrane	0.88	0.23
TraesCS1A01G430500.1	Wheat	plasma membrane	0.88	0.23
GSMUA_Achr1P26100_001	Banana	plasma membrane	0.88	0.1

Protein Annotations

EnsemblPlants:GSMUA_Achr1P26090_001	EnsemblPlants:GSMUA_Achr1T26090_001	EnsemblPlantsGene:GSMUA_Achr1G26090_001	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0008270	GO:GO:0046872	InterPro:IPR011016	InterPro:IPR013083	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD
PANTHER:PTHR13145	PFAM:PF12906	PFscan:PS51292	SEG:seg	SMART:SM00744	SUPFAM:SSF57850
UniParc:UPI000295580F	UniProt:M0S366	MapMan:35.1	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G26090_001]

Coordinates

chr1:+:20860958..20861299

Molecular Weight (calculated)

11919.6 Da

IEP (calculated)

4.169

GRAVY (calculated)

-0.423

Length

113 amino acids

Sequence
(BLAST)

001: MEEIADHPFT SSSSSSVDGQ ATVAGPYSSV AAPPPPPLAP PSPPATGSSV VGRFYDDDDE EGDVCRICRN PGDADNPLRY PCACSGSIKF VHQDCLLQWL
101: NHSNARQCEV GSL

Best Arabidopsis Sequence Match ( AT4G34100.2 )
(BLAST)

0001: MEISPADSLS ISGAAASEVV SEPSVSSSSS SSSPNQASPN PFSNMDPAVS TATGSRYVDD DEDEEDVCRI CRNPGDADNP LRYPCACSGS IKFVHQDCLL
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSEYN FVVRIILLLL
0801: VAWVTLLLFN SALIVVPVSL GRALFSAIPI LPITHGIKCN DLYAFVIGTY AFWTTISGAR YAIEHVKSKR TSVLLNQIWK WCGIVFKSSV LLAIWVFIIP
0901: VLIGLLFELL VIVPMRVPVD ESPVFLLYQD WALGLIFLKI WTRLVMLDHM LPIVDDSWRA KFERVREDGF SRLQGLWVLR EIVFPIVMKL LTALCVPYVL
1001: ARGVFPMLGY PLVVNSAVYR FAWIGCLSVS LFCFCAKRCH VWFRNLHNSI RDDRYLIGRR LHNFGEAALA NQNQNQSSED AGDGVLIGRE GDVDNGLRLR
1101: RAIQQEA

Arabidopsis Description

SUD1Probable E3 ubiquitin ligase SUD1 [Source:UniProtKB/Swiss-Prot;Acc:F4JKK0]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.