Factsheet for TraesCS1A01G430800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G465500.1	Wheat	cytosol	94.1	93.82
TraesCS1D01G439900.1	Wheat	cytosol	88.5	77.38
TraesCS5A01G405100.1	Wheat	plasma membrane	26.02	47.38
TraesCS1A01G430500.1	Wheat	plasma membrane	27.84	42.79
TraesCS1A01G328300.1	Wheat	cytosol	43.42	40.42
Os08t0100400-01	Rice	cytosol	34.95	37.87
TraesCS7A01G340400.1	Wheat	cytosol	50.68	37.1
GSMUA_Achr1P26090_001	Banana	cytosol, plastid	4.84	28.32
Solyc01g020190.2.1	Tomato	plastid	4.99	26.4
Bra029598.1-P	Field mustard	cytosol	9.38	25.2
CDX68876	Canola	cytosol	9.53	23.51
CDX68875	Canola	plasma membrane	7.26	22.64
TraesCS7A01G524600.2	Wheat	cytosol	33.74	20.29
Bra011370.1-P	Field mustard	cytosol	17.7	20.21
GSMUA_Achr1P26100_001	Banana	plasma membrane	27.08	18.23
AT4G32670.1	Thale cress	cytosol	21.79	16.74
CDY05287	Canola	cytosol	20.73	16.39
CDY24672	Canola	extracellular	3.18	15.56
CDX75270	Canola	cytosol	19.82	15.5
Bra001210.1-P	Field mustard	cytosol	21.33	15.23
Bra011369.1-P	Field mustard	cytosol, peroxisome, plasma membrane	20.12	15.06
CDX68877	Canola	cytosol	17.25	14.3
Bra029597.1-P	Field mustard	cytosol	20.27	14.19
CDY05286	Canola	cytosol	20.42	14.18
CDX74093	Canola	cytosol	21.03	14.04
CDY24673	Canola	cytosol	19.67	13.79
CDX68874	Canola	plasma membrane	7.26	13.71
CDX75269	Canola	cytosol, peroxisome, plasma membrane	19.97	13.51
CDY08527	Canola	plasma membrane	6.81	13.47
CDY70269	Canola	plastid	13.16	12.36

Protein Annotations

EnsemblPlants:TraesCS1A01G430800.1	EnsemblPlantsGene:TraesCS1A01G430800	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0008270
InterPro:IPR011016	InterPro:IPR013083	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR13145	PFAM:PF12906
PFscan:PS51292	SEG:seg	SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	MapMan:19.2.1.1.1.1

Description

No Description!

Coordinates

chr1A:+:583301530..583305437

Molecular Weight (calculated)

74041.9 Da

IEP (calculated)

8.543

GRAVY (calculated)

0.626

Length

661 amino acids

Sequence
(BLAST)

001: MVVADATGGE EGARISPKGG QGEEEAEEQL CRICRLPAEA ERPLRSPCAC RGSIRFVHDE CQLRWIAARG KPLCEVCNRG ITTRLLYAAD APTRLPVSEF
101: MVGASDKLTG LLLLLVFAVC VVPEFSVHLA ALWAWRLALA RSFAQACCLL SLRLSTASAL ALFALCIAFA CRFAPFAVAP FAPWVARLET RRQGFRGFDG
201: LQVLALLAVE AFLMVVIFDM ALACILVFIP FSLGRIIHWC ISCSSFSSVG EVNSYTSTGS ALLIGYGLII SVGVTFPGLN TLWQYFRGER FMIAIFIRRL
301: HARFLRETAG FTTLASILLS AFIMYPLFFG WLLDVFTSKM FGATMSQRLE LLFAPSFASA SLHCFIGHIF LNLRLWLSVT LHKILRLGVA CPCCHIHRNH
401: IQEPFHKFYF KRALLYDVIF MAVVIFAPVQ IAGQLAPELF PLDITCAAEG LSLWQAPRNY ANSISRVFIV WFLIKGTSTV TYLESLVKKS IAIPFLNGLL
501: VDLFLISPIV GPADDVSLSY IWALGFLFMR IWLKLVQQIR ARPVLAYIID ERWVPTIVRW KADCLSWEIS MCWFLQEIFM PIATRLLAAL GVPYVLAKVV
601: FPRFGYSAAV NSAVYRFAWL GSLGSCELCY LFKVLCVKLH DSIRDERYVI GKRLEDVPDD R

Best Arabidopsis Sequence Match ( AT4G34100.2 )
(BLAST)

0001: MEISPADSLS ISGAAASEVV SEPSVSSSSS SSSPNQASPN PFSNMDPAVS TATGSRYVDD DEDEEDVCRI CRNPGDADNP LRYPCACSGS IKFVHQDCLL
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSEYN FVVRIILLLL
0801: VAWVTLLLFN SALIVVPVSL GRALFSAIPI LPITHGIKCN DLYAFVIGTY AFWTTISGAR YAIEHVKSKR TSVLLNQIWK WCGIVFKSSV LLAIWVFIIP
0901: VLIGLLFELL VIVPMRVPVD ESPVFLLYQD WALGLIFLKI WTRLVMLDHM LPIVDDSWRA KFERVREDGF SRLQGLWVLR EIVFPIVMKL LTALCVPYVL
1001: ARGVFPMLGY PLVVNSAVYR FAWIGCLSVS LFCFCAKRCH VWFRNLHNSI RDDRYLIGRR LHNFGEAALA NQNQNQSSED AGDGVLIGRE GDVDNGLRLR
1101: RAIQQEA

Arabidopsis Description

SUD1Probable E3 ubiquitin ligase SUD1 [Source:UniProtKB/Swiss-Prot;Acc:F4JKK0]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.