Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G430800.1 | Wheat | cytosol | 77.38 | 88.5 |
| TraesCS1B01G465500.1 | Wheat | cytosol | 77.12 | 87.93 |
| TraesCS5D01G415200.1 | Wheat | plasma membrane | 44.97 | 49.78 |
| TraesCS1D01G330800.1 | Wheat | cytosol | 45.5 | 48.73 |
| TraesCS7D01G348000.2 | Wheat | cytosol | 52.78 | 44.23 |
| TraesCS1D01G440100.2 | Wheat | cytosol, nucleus, plasma membrane | 44.97 | 41.67 |
| Os08t0100400-01 | Rice | cytosol | 32.41 | 40.16 |
| GSMUA_Achr1P26090_001 | Banana | cytosol, plastid | 4.37 | 29.2 |
| Solyc01g020190.2.1 | Tomato | plastid | 4.5 | 27.2 |
| Bra029598.1-P | Field mustard | cytosol | 8.33 | 25.61 |
| CDX68876 | Canola | cytosol | 8.33 | 23.51 |
| CDX68875 | Canola | plasma membrane | 6.48 | 23.11 |
| GSMUA_Achr1P26100_001 | Banana | plasma membrane | 27.51 | 21.18 |
| TraesCS7D01G513500.2 | Wheat | cytosol | 31.75 | 20.74 |
| Bra011370.1-P | Field mustard | cytosol | 15.87 | 20.73 |
| AT4G32670.1 | Thale cress | cytosol | 21.83 | 19.19 |
| CDY05287 | Canola | cytosol | 20.5 | 18.54 |
| CDX75270 | Canola | cytosol | 19.84 | 17.75 |
| Bra001210.1-P | Field mustard | cytosol | 21.56 | 17.6 |
| CDX68874 | Canola | plasma membrane | 8.07 | 17.43 |
| Bra011369.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 19.97 | 17.1 |
| CDY24672 | Canola | extracellular | 3.04 | 17.04 |
| CDX68877 | Canola | cytosol | 17.59 | 16.69 |
| CDY05286 | Canola | cytosol | 20.9 | 16.6 |
| CDX74093 | Canola | cytosol | 21.56 | 16.46 |
| Bra029597.1-P | Field mustard | cytosol | 20.5 | 16.42 |
| CDY24673 | Canola | cytosol | 19.84 | 15.91 |
| CDX75269 | Canola | cytosol, peroxisome, plasma membrane | 19.71 | 15.25 |
| CDY70269 | Canola | plastid | 13.23 | 14.2 |
| CDY08527 | Canola | plasma membrane | 5.95 | 13.47 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G439900.1 | EnsemblPlantsGene:TraesCS1D01G439900 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 |
| InterPro:IPR011016 | InterPro:IPR013083 | InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR13145 | PFAM:PF12906 |
| PFscan:PS51292 | SEG:seg | SMART:SM00744 | SUPFAM:SSF57850 | TMHMM:TMhelix | MapMan:19.2.1.1.1.1 |
Description
No Description!
Coordinates
chr1D:+:485714270..485718231
Molecular Weight (calculated)
84690.4 Da
IEP (calculated)
9.002
GRAVY (calculated)
0.668
Length
756 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVADATGGE EGARISPKGG QGEEDAEEQL CRICRLPAEA ERPLRSPCAC RGSIRFVHDE CQLRWISARG KPLCEVCNRG ITTRLLYAAD APARLPVSEF
101: IVGASDKLTG LLLLLVFVVC VVPEFSIHLA ALWAWHLALA RSFAQARCLL SLRLSTASAI ALFALCVAFA RRFAPFAVAP FARWVARLET RRQGFRGFDG
201: LQVLALLAVE AFLMVVIFDM ALACILVFLP FSLGRIIHWC ISCSIFSNVG EVNSYTSTGS ALLIGYGLII SVGVTFPGLN TLWQYFRGER LMIAIFIRRL
301: HARFLRETAG FTTLASILLS AFIMYPLFFG WLLDIFTSKM FGATMSQRLE LLFAPSFASA SLHCFIGHIF LNLRLWLSVT LHKILRLGAC PCCHIHRNHI
401: QEPFHKFYFK RALLYDVIFM AVVIFVPVQI AGQLAPELFP LDINCAAEGL SLWQAPRNYA NSISRVFIVW FLLKGTSTVT YLESLVKKVT RYSYATNVVL
501: TWSTVAIYSS AVLIFPISIG RALLLAITRM PVASGLESND LLALVVGIGI ILTIIAATRD SIAYMTCGRP RHLALKYSMI VFLWFIVIPF LNGLLVDLFL
601: ISPFVGPADD VSLSYTWALG FLFMRIWLKL VQQIRARPVL AYIIDERWVP TIVRWKADCL SWEISMFWFL QEIFLPIAMR LLVALGVPYV LAKGVFPRFG
701: YSAAVNAAVY RFAWLGSLGS CELCYLLKVL CFKLHDSIRD ERYVIGKRLE DVPHDS
101: IVGASDKLTG LLLLLVFVVC VVPEFSIHLA ALWAWHLALA RSFAQARCLL SLRLSTASAI ALFALCVAFA RRFAPFAVAP FARWVARLET RRQGFRGFDG
201: LQVLALLAVE AFLMVVIFDM ALACILVFLP FSLGRIIHWC ISCSIFSNVG EVNSYTSTGS ALLIGYGLII SVGVTFPGLN TLWQYFRGER LMIAIFIRRL
301: HARFLRETAG FTTLASILLS AFIMYPLFFG WLLDIFTSKM FGATMSQRLE LLFAPSFASA SLHCFIGHIF LNLRLWLSVT LHKILRLGAC PCCHIHRNHI
401: QEPFHKFYFK RALLYDVIFM AVVIFVPVQI AGQLAPELFP LDINCAAEGL SLWQAPRNYA NSISRVFIVW FLLKGTSTVT YLESLVKKVT RYSYATNVVL
501: TWSTVAIYSS AVLIFPISIG RALLLAITRM PVASGLESND LLALVVGIGI ILTIIAATRD SIAYMTCGRP RHLALKYSMI VFLWFIVIPF LNGLLVDLFL
601: ISPFVGPADD VSLSYTWALG FLFMRIWLKL VQQIRARPVL AYIIDERWVP TIVRWKADCL SWEISMFWFL QEIFLPIAMR LLVALGVPYV LAKGVFPRFG
701: YSAAVNAAVY RFAWLGSLGS CELCYLLKVL CFKLHDSIRD ERYVIGKRLE DVPHDS
0001: MEISPADSLS ISGAAASEVV SEPSVSSSSS SSSPNQASPN PFSNMDPAVS TATGSRYVDD DEDEEDVCRI CRNPGDADNP LRYPCACSGS IKFVHQDCLL
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSDRY NFVVRIILLL
0801: LVAWVTLLLF NSALIVVPVS LGRALFSAIP ILPITHGIKC NDLYAFVIGT YAFWTTISGA RYAIEHVKSK RTSVLLNQIW KWCGIVFKSS VLLAIWVFII
0901: PVLIGLLFEL LVIVPMRVPV DESPVFLLYQ DWALGLIFLK IWTRLVMLDH MLPIVDDSWR AKFERVREDG FSRLQGLWVL REIVFPIVMK LLTALCVPYV
1001: LARGVFPMLG YPLVVNSAVY RFAWIGCLSV SLFCFCAKRC HVWFRNLHNS IRDDRYLIGR RLHNFGEAAL ANQNQNQSSE DAGDGVLIGR EGDVDNGLRL
1101: RRAIQQEA
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSDRY NFVVRIILLL
0801: LVAWVTLLLF NSALIVVPVS LGRALFSAIP ILPITHGIKC NDLYAFVIGT YAFWTTISGA RYAIEHVKSK RTSVLLNQIW KWCGIVFKSS VLLAIWVFII
0901: PVLIGLLFEL LVIVPMRVPV DESPVFLLYQ DWALGLIFLK IWTRLVMLDH MLPIVDDSWR AKFERVREDG FSRLQGLWVL REIVFPIVMK LLTALCVPYV
1001: LARGVFPMLG YPLVVNSAVY RFAWIGCLSV SLFCFCAKRC HVWFRNLHNS IRDDRYLIGR RLHNFGEAAL ANQNQNQSSE DAGDGVLIGR EGDVDNGLRL
1101: RRAIQQEA
Arabidopsis Description
SUD1Probable E3 ubiquitin ligase SUD1 [Source:UniProtKB/Swiss-Prot;Acc:F4JKK0]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.