CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75269	Canola	cytosol, peroxisome, plasma membrane	57.71	20.68
CDX75270	Canola	cytosol	41.43	17.16
CDY05287	Canola	cytosol	39.71	16.63
CDX68877	Canola	cytosol	34.86	15.31
CDY05286	Canola	cytosol	39.14	14.39
CDY24673	Canola	cytosol	38.57	14.32
CDX74093	Canola	cytosol	39.43	13.94
CDY49274	Canola	cytosol	27.43	12.11
CDY62724	Canola	cytosol	28.86	11.94
CDY51956	Canola	cytosol	27.71	11.58
CDY51866	Canola	cytosol	27.14	11.05
TraesCS1A01G328300.1	Wheat	cytosol	22.29	10.99
TraesCS1D01G330800.1	Wheat	cytosol	21.43	10.62
GSMUA_Achr1P26100_001	Banana	plasma membrane	28.57	10.18
CDY70269	Canola	plastid	20.29	10.09
TraesCS1B01G342100.2	Wheat	cytosol	20.29	10.09
TraesCS1B01G465300.1	Wheat	cytosol	21.71	9.66
TraesCS7D01G348000.2	Wheat	cytosol	24.86	9.65
TraesCS5D01G415200.1	Wheat	plasma membrane	18.57	9.52
TraesCS7B01G252000.1	Wheat	cytosol	24.57	9.51
TraesCS7A01G340400.1	Wheat	cytosol	24.29	9.41
HORVU7Hr1G083770.3	Barley	cytosol	24.86	9.31
TraesCS1D01G440100.2	Wheat	cytosol, nucleus, plasma membrane	21.43	9.19
HORVU5Hr1G098410.4	Barley	plasma membrane	20.29	8.96
CDX69024	Canola	cytosol, plastid	28.29	8.94
CDX75396	Canola	cytosol, plastid	28.29	8.92
HORVU1Hr1G093800.1	Barley	cytosol	19.71	8.91
CDY24672	Canola	extracellular	3.14	8.15
TraesCS1D01G439900.1	Wheat	cytosol	17.43	8.07
TraesCS1B01G465700.1	Wheat	cytosol	18.57	8.03
TraesCS1B01G465500.1	Wheat	cytosol	14.0	7.39
TraesCS1A01G430800.1	Wheat	cytosol	13.71	7.26
HORVU1Hr1G093830.1	Barley	plasma membrane	15.71	7.1
CDX68876	Canola	cytosol	5.43	7.09
TraesCS5A01G405100.1	Wheat	plasma membrane	4.0	3.86
CDX68875	Canola	plasma membrane	2.0	3.3
Os08t0100400-01	Rice	cytosol	4.86	2.79
GSMUA_Achr1P26090_001	Banana	cytosol, plastid	0.86	2.65
TraesCS1B01G465200.1	Wheat	plasma membrane	3.14	2.56
TraesCS1A01G430500.1	Wheat	plasma membrane	3.14	2.56
Solyc01g020190.2.1	Tomato	plastid	0.57	1.6
CDY08527	Canola	plasma membrane	1.43	1.5

Protein Annotations

EnsemblPlants:CDX68874	EnsemblPlantsGene:GSBRNA2T00130599001	GO:A0A078BY73	PANTHER:PTHR13145	ProteinID:CDX68874	ProteinID:CDX68874.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE31FA	MapMan:19.2.1.1.1.1	:	:

Description

BnaC01g05790D

Coordinates

chrLK031789:-:1679917..1681468

Molecular Weight (calculated)

40870.6 Da

IEP (calculated)

5.405

GRAVY (calculated)

0.467

Length

350 amino acids

Sequence
(BLAST)

001: MEWLDELIKP AMEPIVHKWI ITVSSWLQLS DFFLENHANQ NVRPLLQQEL EARDSWSILS PIAEGSLVRF YESQNDATSE EDTDDDRFIT LRIGLMFVLA
101: ALSLFLISTI SMALPILVGR TFFHCIYFIM IKFRLKNDDV YGFWIGCYIL RESYVGTCFI FNLIMNRRTD LLLNLVLLWI RNTLLLSIWV PLKEPPVYLL
201: LRDWLIGLVV LHIWTYLTMF TRVNCFATVA CREKLDRIKS VGINRLPWTW LLGNVMCPII NTLLTTLAFP FWVANSLFPL LQFSGAVDQA VQRLIWPVLL
301: AIIILGLAAK LTLDLFLYIH RLEYDDRYMV GDRVADFIED QEYGIKLRTM

Best Arabidopsis Sequence Match ( AT4G32670.1 )
(BLAST)

001: MEISPAEDKL VGSGEAVTTE EVSDINNKAV DICRICQSPE EPDNPLRHPC ACRGSLKYIH SDCLFLWLNR RKRNHCEICK RSYSIVPVYS ENAPERLPWH
101: EFLMGLLMRA LRFMNLILPW ILMMPFNAYC FSFRPWGRES EFVNQTVFEL SLRFPGLFYT AQIVSSATEM VVQMETIRVL LRRHPEFLRR MIILENGLKD
201: RDVTGIVLLL ANHLQILCDW WHDQLLQLPF LHIFQRGPLA LAFVPRNTPL HQFGAIRRVF SLLSDNTFAV LAINIYWSFF RVLLPFSIGR VVLVLLRCLP
301: HGWIAENASE MAAGDMVIRS VLLACLGGVF TMSRDTYLTS VRTFLPSVKD TFILSFKLGV LPWLLGCWLH FCTFPILGKT ASHTVEVLSD YPLMADKHWL
401: MGTLYLVSAL SCMELIQKIV QKRALWYLLD VAEPNYKVTK LHLGPILLAF ALHGTMVVIV LHLPIKTISL ISQSFFPLQF GVYEDEFVFG LLVAYMCLVI
501: FGPRWLANLI RPSIRPIVHK WVITISSLLK LSDFLLGEPR KHRANHNMRL RCLVFGIAEG SMVSLHGSQS DTTCEKDTNE QRDKRFMVRI GVMLILASLS
601: MFLVSTTFMA LPILVGRAFF HSISFFMLSF GLKHDDLCAF WIGFCILRGI YIITCFVYDH FITGRTDLLL NHVLMFIRNV LLFSIWISVI PGVLGLLIDL
701: MIIIPSQVPL GESPVYNLLH DWLIGVVVLH IWIFLTMLTR INCFATVAWR EKLQRIRSVT INRLPFTWLI RDVIGSIIVS LLFTLCVPYV VVNSLFPILG
801: FSSAVNLTVQ RFIWPAILAL IPIWFSVKLI RDLILYLHKL EFDNRYKVGE RLVDFTEDLE

Arabidopsis Description

RING/FYVE/PHD zinc finger superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JV39]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.