Factsheet for Bra001210.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
peroxisome 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74093	Canola	cytosol	90.82	84.95
Bra029597.1-P	Field mustard	cytosol	54.54	53.5
Bra011369.1-P	Field mustard	cytosol, peroxisome, plasma membrane	36.72	38.51
Bra011370.1-P	Field mustard	cytosol	23.76	38.0
Bra029598.1-P	Field mustard	cytosol	9.72	36.59
TraesCS1A01G328300.1	Wheat	cytosol	20.09	26.2
GSMUA_Achr1P26090_001	Banana	cytosol, plastid	3.13	25.66
Solyc01g020190.2.1	Tomato	plastid	3.46	25.6
TraesCS1B01G342100.2	Wheat	cytosol	19.22	25.28
TraesCS1D01G330800.1	Wheat	cytosol	18.9	24.79
Bra017626.1-P	Field mustard	cytosol	22.25	24.38
HORVU5Hr1G098410.4	Barley	plasma membrane	19.33	22.6
Bra034602.1-P	Field mustard	plasma membrane	20.19	22.48
TraesCS1B01G465300.1	Wheat	cytosol	18.79	22.11
TraesCS1B01G465500.1	Wheat	cytosol	15.66	21.87
TraesCS7A01G340400.1	Wheat	cytosol	21.17	21.71
TraesCS1D01G439900.1	Wheat	cytosol	17.6	21.56
TraesCS7D01G348000.2	Wheat	cytosol	20.84	21.4
TraesCS1A01G430800.1	Wheat	cytosol	15.23	21.33
HORVU1Hr1G093800.1	Barley	cytosol	17.82	21.32
Bra011487.1-P	Field mustard	cytosol, plastid	25.7	21.31
TraesCS7B01G252000.1	Wheat	cytosol	20.73	21.24
TraesCS5D01G415200.1	Wheat	plasma membrane	15.55	21.08
TraesCS1B01G465700.1	Wheat	cytosol	18.36	21.01
TraesCS1D01G440100.2	Wheat	cytosol, nucleus, plasma membrane	18.47	20.96
HORVU7Hr1G083770.3	Barley	cytosol	20.3	20.13
GSMUA_Achr1P26100_001	Banana	plasma membrane	21.17	19.96
Os08t0100400-01	Rice	cytosol	12.85	19.51
HORVU1Hr1G093830.1	Barley	plasma membrane	16.31	19.48
TraesCS1B01G465200.1	Wheat	plasma membrane	7.88	16.98
TraesCS1A01G430500.1	Wheat	plasma membrane	7.67	16.51
TraesCS5A01G405100.1	Wheat	plasma membrane	6.05	15.43

Protein Annotations

MapMan:19.2.1.1.1.1	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra001210	EnsemblPlants:Bra001210.1	EnsemblPlants:Bra001210.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872
InterPro:IPR011016	InterPro:IPR013083	UniProt:M4CAI1	PFAM:PF12906	PFscan:PS51292	PANTHER:PTHR13145
SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI00025403F4	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

AT4G32670 (E=2e-146) | zinc ion binding

Coordinates

chrA03:-:15346329..15350782

Molecular Weight (calculated)

106800.0 Da

IEP (calculated)

8.250

GRAVY (calculated)

0.506

Length

926 amino acids

Sequence
(BLAST)

001: MTQLGGSDQI FSHGEQEEDG EEKLCRICRS AEEPGNALMH PCSCRGSIKY VHHDCLLIWL NRRGYKQCEV CGRSYSYVPV YSENAPERLP CKEFLIEVLL
101: RAVKLIVAWL AVMLLNTYFV SFHPWAQQLA AAHSRNDSWM SRRLAYWHPG LLYSILVVSF MTMMTTIMVT EVGDVDVRRF GRVVEVLWKH MTILCVWYHR
201: KLGRVFGQPH RPIVLPQNAE VHEFGVIREL LFFLDDDAFA LLAISVYVST LFVLLPVWIG WAVLATVGGS FLFGNSPVTL GYVTLLSTCF AYFTLPLIPF
301: PAIVRWVSLG VHFTALKLPC LLWAFSVKSC KALQSQTSFP AIVKWFSLGF HYIAVILPPL LWIFIKEASV LCFKIGVVPW MIGYWLEICT SPLFGTSFFL
401: RFETLSDFPG MTTLRWVAGT LYLFVAESFM KRIQEIVHKR AFWYLVDVTD PDYDITKMNF AYTLFALASH CVSLVIMFHL PIRAITLISP SFFPLVLWVM
501: DEKVSLGARF VYFRLLTSSP KWLIGLTKPA VELLVQKWVI TVSSWLELSD FLLVAPRGED LDQNVRPVMQ PRSFLLFCSL AEGSMVTLHG SQNDEDDVKD
601: QRDNRFLLRI VLMLMLAALS LFIVSTAFMA LPILLGRVFL EFISSLMLRY FGLKRDDLCA FWIGYSTLEE IYTFTCFAYD QIHKGRIDVL LRDIRNGLLF
701: FIWITVVPGL LGLLIDLMII IPTRVPLDES PVYFLFQDWL IGVVVLHIWA LLTMLTPINW FATKALRRKF ERIRTVGIDR LPSMWLLREV IGSIAITLLI
801: TLSFPYLLVK YLIPLLGYQE SVNSAVERFI WPALFALVAV WFMVKLTREV VIYVHQLVFN ERYMVGERVG NLAEEDIELR CNFCVQVKER VTLSRKARAQ
901: SSFKVRRQFL RILLKYIVEH QELICE

Best Arabidopsis Sequence Match ( AT4G32670.1 )
(BLAST)

001: MEISPAEDKL VGSGEAVTTE EVSDINNKAV DICRICQSPE EPDNPLRHPC ACRGSLKYIH SDCLFLWLNR RKRNHCEICK RSYSIVPVYS ENAPERLPWH
101: EFLMGLLMRA LRFMNLILPW ILMMPFNAYC FSFRPWGRES EFVNQTVFEL SLRFPGLFYT AQIVSSATEM VVQMETIRVL LRRHPEFLRR MIILENGLKD
201: RDVTGIVLLL ANHLQILCDW WHDQLLQLPF LHIFQRGPLA LAFVPRNTPL HQFGAIRRVF SLLSDNTFAV LAINIYWSFF RVLLPFSIGR VVLVLLRCLP
301: HGWIAENASE MAAGDMVIRS VLLACLGGVF TMSRDTYLTS VRTFLPSVKD TFILSFKLGV LPWLLGCWLH FCTFPILGKT ASHTVEVLSD YPLMADKHWL
401: MGTLYLVSAL SCMELIQKIV QKRALWYLLD VAEPNYKVTK LHLGPILLAF ALHGTMVVIV LHLPIKTISL ISQSFFPLQF GVYEDEFVFG LLVAYMCLVI
501: FGPRWLANLI RPSIRPIVHK WVITISSLLK LSDFLLGEPR KHRANHNMRL RCLVFGIAEG SMVSLHGSQS DTTCEKDTNE QRDKRFMVRI GVMLILASLS
601: MFLVSTTFMA LPILVGRAFF HSISFFMLSF GLKHDDLCAF WIGFCILRGI YIITCFVYDH FITGRTDLLL NHVLMFIRNV LLFSIWISVI PGVLGLLIDL
701: MIIIPSQVPL GESPVYNLLH DWLIGVVVLH IWIFLTMLTR INCFATVAWR EKLQRIRSVT INRLPFTWLI RDVIGSIIVS LLFTLCVPYV VVNSLFPILG
801: FSSAVNLTVQ RFIWPAILAL IPIWFSVKLI RDLILYLHKL EFDNRYKVGE RLVDFTEDLE

Arabidopsis Description

RING/FYVE/PHD zinc finger superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JV39]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.