Factsheet for PGSC0003DMT400066581

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

nucleus 2
plastid 3
cytosol 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400075691

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34100.1	PGSC0003DMT400075691	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g107880.2.1	Tomato	plasma membrane, plastid	99.01	99.1
KRH70672	Soybean	plasma membrane, plastid	79.07	78.29
VIT_03s0063g00080.t01	Wine grape	plasma membrane	77.99	78.2
KRH50333	Soybean	mitochondrion	78.71	77.94
AT4G34100.1	Thale cress	cytosol, plastid	75.56	75.9
CDX69024	Canola	cytosol, plastid	75.02	75.36
CDX75396	Canola	cytosol, plastid	75.02	75.23
Bra011487.1-P	Field mustard	cytosol, plastid	74.93	74.66
Os06t0639100-02	Rice	cytosol, peroxisome, plasma membrane	67.74	69.3
KXG20452	Sorghum	cytosol	67.03	68.69
TraesCS7B01G442100.1	Wheat	cytosol	67.21	68.06
TraesCS7A01G524600.2	Wheat	cytosol	67.21	68.06
Zm00001d036765_P003	Maize	cytosol	66.31	68.02
Zm00001d046624_P005	Maize	cytosol	66.94	67.67
HORVU7Hr1G116420.2	Barley	cytosol, mitochondrion, plasma membrane	67.48	65.59
TraesCS7D01G513500.2	Wheat	cytosol	67.3	64.74
CDY51866	Canola	cytosol	48.97	63.37
Bra017626.1-P	Field mustard	cytosol	47.71	62.84
CDY62724	Canola	cytosol	47.08	61.94
CDY51956	Canola	cytosol	46.36	61.58
CDY49274	Canola	cytosol	43.67	61.29
Bra034602.1-P	Field mustard	plasma membrane	42.32	56.61
GSMUA_Achr3P13170_001	Banana	plasma membrane	49.78	56.3

Protein Annotations

EntrezGene:102585474	MapMan:19.2.1.1.1.1	Gene3D:3.30.40.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0006629	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0008299	GO:GO:0009058	GO:GO:0009414	GO:GO:0009628	GO:GO:0009987
GO:GO:0010025	GO:GO:0010143	GO:GO:0010345	GO:GO:0016020	GO:GO:0016021	GO:GO:0019748
GO:GO:0042335	GO:GO:0046872	GO:GO:1900490	InterPro:IPR011016	InterPro:IPR013083	UniProt:M1CFT6
PFAM:PF12906	EnsemblPlantsGene:PGSC0003DMG400025880	PGSC:PGSC0003DMG400025880	EnsemblPlants:PGSC0003DMT400066581	PFscan:PS51292	PANTHER:PTHR13145
SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI00029605C5	RefSeq:XP_006346393.1	InterPro:Znf_RING-CH
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

Protein binding / zinc ion binding [Source:PGSC_GENE;Acc:PGSC0003DMG400025880]

Coordinates

chr1:-:84242570..84250253

Molecular Weight (calculated)

124436.0 Da

IEP (calculated)

6.311

GRAVY (calculated)

0.302

Length

1113 amino acids

Sequence
(BLAST)

0001: MEIATAVPAS NDGGGGGISP AERSSTDAIN SSSSPSASSS SGLSTEQVTR KDLNSLASRF DDDEEEEDVC RICRNPGEAD NPLRYPCACS GSIKYVHQDC
0101: LLQWLNHSNA RQCEVCKHAF SFSPVYAENA PARLPFQEFV VGMAMKACHV LQFFLRLSFV LSVWLLIIPF ITFWIWRLAF VRSFGEAHRL FLGHLSTTII
0201: LTDCLHGFLL SASIVFIFLG ATSLRDYFRH LRELGGQEAD REDDVDRNAA RAPRRPVAPA NRNFAADGNE EDANGAQGIA GAGQLIRRNA ENVAARWEMQ
0301: AARLEAHVEQ MFDGLDDADG AEDVPFDELV GMQGPVFHLV ENAFTVLASN MIFLGVVIFV PFSLGRIILY NLSWILSSAS NPVLSTVMPL TETALSLANI
0401: TLKSAWIAVA NLTPTANEES SLLGQVTEML KANATELSEA ANNLSTTVST DLLKGSSVGT SRLSDVTTLA VGYMFIFSLV FFYLGIIALI RYTRGEPLTL
0501: GRFYGIASIA ETIPSLFRQF VAAMRHLMTM IKVAFLLVIE LGVFPLMCGW WLDVCTIRMF GKSITQRVEF FSVSPLASSL VHWVVGIVYM LQISIFVSLL
0601: RGVLRNGVLY FLRDPADPNY NPFRDLIDDP VHKHARRVLL SVAVYGSLIV MLVYLPVKLA MRMAPSIFPL DISVSDPFTE IPADMLLFQI CIPFAIEHFK
0701: LRTTIKSLLR YWFTAVGWSL GLTDFLLPRP EDNGRQENGN GDQGRQDRFQ APHGVPDRAL VGFAPDNRAR HAAASSNFVE DYDNEEQADP DRYAFVLRIV
0801: LLLVVAWMTL LLFNSALIIV PISLGRALFN SLPLLPITHG IKCNDLYAFV IGSYAIWTAI AGARYSIDQV RTRRVAALMN QIWKWCVIVL KSSALLSIWI
0901: FIIPVLIGLL FELLVIVPMR VPIDESPVFL LYQDWALGLI FLKIWTRLVM LDHMMPLVDE SWRLKFERVR ENGFSRLQGF WVLREIVLPI IMKLLTALCV
1001: PYVLARGVFP ILGYPLLVNS AVYRFAWIGC LGFSLFCFCA KRFHVWFTNL HNSIRDDRYL IGRRLHNFGE EVLQRHNEVE VGGEGEIPLL NGGDVEEVAD
1101: IGLRHRRGIM QDA

Best Arabidopsis Sequence Match ( AT4G34100.2 )
(BLAST)

0001: MEISPADSLS ISGAAASEVV SEPSVSSSSS SSSPNQASPN PFSNMDPAVS TATGSRYVDD DEDEEDVCRI CRNPGDADNP LRYPCACSGS IKFVHQDCLL
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSEYN FVVRIILLLL
0801: VAWVTLLLFN SALIVVPVSL GRALFSAIPI LPITHGIKCN DLYAFVIGTY AFWTTISGAR YAIEHVKSKR TSVLLNQIWK WCGIVFKSSV LLAIWVFIIP
0901: VLIGLLFELL VIVPMRVPVD ESPVFLLYQD WALGLIFLKI WTRLVMLDHM LPIVDDSWRA KFERVREDGF SRLQGLWVLR EIVFPIVMKL LTALCVPYVL
1001: ARGVFPMLGY PLVVNSAVYR FAWIGCLSVS LFCFCAKRCH VWFRNLHNSI RDDRYLIGRR LHNFGEAALA NQNQNQSSED AGDGVLIGRE GDVDNGLRLR
1101: RAIQQEA

Arabidopsis Description

SUD1Probable E3 ubiquitin ligase SUD1 [Source:UniProtKB/Swiss-Prot;Acc:F4JKK0]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.