Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX81068 | Canola | cytosol | 63.26 | 70.46 |
| Bra005951.1-P | Field mustard | cytosol | 63.64 | 68.57 |
| CDX78308 | Canola | cytosol | 63.26 | 68.16 |
| AT5G61360.1 | Thale cress | cytosol | 38.26 | 48.1 |
Protein Annotations
| MapMan:35.2 | EntrezGene:830666 | ProteinID:AED91198.1 | ArrayExpress:AT5G07730 | EnsemblPlantsGene:AT5G07730 | RefSeq:AT5G07730 |
| TAIR:AT5G07730 | RefSeq:AT5G07730-TAIR-G | EnsemblPlants:AT5G07730.1 | TAIR:AT5G07730.1 | EMBL:AY054599 | EMBL:AY072525 |
| Unigene:At.26458 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_568183.1 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020100 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR37206 | PANTHER:PTHR37206:SF1 | UniProt:Q93XY2 |
| TMHMM:TMhelix | UniParc:UPI000009E56C | SEG:seg | : | : | : |
Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q93XY2]
Coordinates
chr5:-:2457347..2458502
Molecular Weight (calculated)
30095.5 Da
IEP (calculated)
6.353
GRAVY (calculated)
-0.591
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEDEDHYCE QHLIGPLDHS SSMVVIRESP IFAKDDGVVF PPIYHENLHV ASSVYGVDRY LESPSESSSP SSSSRRSGSS SSFSLFPSDS DGQTSLTAFE
101: FDRKAPSETE EKSLPLLLSG ESPPSDSGEQ SPFEQISPRL PSEQGGKSPP CDSDGKLLGK PLNREVDVLH DWWEPLLVRL YSKLKNLLTW FSKTIRSFYP
201: VLAIAIWWWM RVRAPRKRVK GENMDHLRDV IKERDERIVQ LLHQLAQMNE LLLKHHKDIV SRRR
101: FDRKAPSETE EKSLPLLLSG ESPPSDSGEQ SPFEQISPRL PSEQGGKSPP CDSDGKLLGK PLNREVDVLH DWWEPLLVRL YSKLKNLLTW FSKTIRSFYP
201: VLAIAIWWWM RVRAPRKRVK GENMDHLRDV IKERDERIVQ LLHQLAQMNE LLLKHHKDIV SRRR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.