Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78308 | Canola | cytosol | 88.61 | 85.71 |
| AT5G07730.1 | Thale cress | nucleus | 70.46 | 63.26 |
| CDY02153 | Canola | endoplasmic reticulum, extracellular, mitochondrion, plastid | 16.03 | 52.05 |
| CDY68949 | Canola | cytosol | 23.21 | 44.0 |
Protein Annotations
| EnsemblPlants:CDX81068 | EnsemblPlantsGene:GSBRNA2T00134509001 | GO:A0A078D182 | ncoils:Coil | PANTHER:PTHR37206 | PANTHER:PTHR37206:SF1 |
| ProteinID:CDX81068 | ProteinID:CDX81068.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EF2E3E | MapMan:35.2 |
Description
BnaC03g03220D
Coordinates
chrLK031823:-:1554361..1555435
Molecular Weight (calculated)
27196.1 Da
IEP (calculated)
5.699
GRAVY (calculated)
-0.610
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEDDDLYYQ QHLIEPMDPV SSMVVIRESP IFAKDDRLVF PPVNHENLQL ASSVSEFDNP YLESPSSESE SPSSSSRGSA SSSSFSLSPS DSDGQPPLSP
101: CEFYQKLPES PPSDSDGQSP PLTGLKRGGE SPPPRKVLYR EADDVLRHWW ELLLVRAYSK IKNLMTWFST TLRPFYPVLA IAIWWWMRRR RRVNGESRDL
201: LRGAINERDE RIVQLLQQIA QMNELLIKHH KEIVSRR
101: CEFYQKLPES PPSDSDGQSP PLTGLKRGGE SPPPRKVLYR EADDVLRHWW ELLLVRAYSK IKNLMTWFST TLRPFYPVLA IAIWWWMRRR RRVNGESRDL
201: LRGAINERDE RIVQLLQQIA QMNELLIKHH KEIVSRR
001: MAEDEDHYCE QHLIGPLDHS SSMVVIRESP IFAKDDGVVF PPIYHENLHV ASSVYGVDRY LESPSESSSP SSSSRRSGSS SSFSLFPSDS DGQTSLTAFE
101: FDRKAPSETE EKSLPLLLSG ESPPSDSGEQ SPFEQISPRL PSEQGGKSPP CDSDGKLLGK PLNREVDVLH DWWEPLLVRL YSKLKNLLTW FSKTIRSFYP
201: VLAIAIWWWM RVRAPRKRVK GENMDHLRDV IKERDERIVQ LLHQLAQMNE LLLKHHKDIV SRRR
101: FDRKAPSETE EKSLPLLLSG ESPPSDSGEQ SPFEQISPRL PSEQGGKSPP CDSDGKLLGK PLNREVDVLH DWWEPLLVRL YSKLKNLLTW FSKTIRSFYP
201: VLAIAIWWWM RVRAPRKRVK GENMDHLRDV IKERDERIVQ LLHQLAQMNE LLLKHHKDIV SRRR
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q93XY2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.