Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022807.1-P | Field mustard | cytosol | 15.62 | 95.71 |
| CDX97807 | Canola | nucleus | 78.55 | 81.01 |
| CDY29659 | Canola | nucleus | 77.86 | 79.33 |
| CDY10748 | Canola | nucleus | 74.36 | 75.77 |
| CDY47131 | Canola | nucleus | 73.43 | 75.54 |
| AT2G30580.1 | Thale cress | nucleus | 73.89 | 75.48 |
| VIT_07s0141g00610.t01 | Wine grape | nucleus | 48.25 | 48.14 |
| PGSC0003DMT400038984 | Potato | nucleus | 48.02 | 47.91 |
| KRG95629 | Soybean | nucleus | 47.79 | 47.9 |
| Solyc06g008600.2.1 | Tomato | nucleus | 46.39 | 47.61 |
| KRH67309 | Soybean | nucleus | 49.18 | 47.42 |
| Solyc06g084040.2.1 | Tomato | nucleus | 47.09 | 46.87 |
| Solyc09g065990.2.1 | Tomato | nucleus | 46.62 | 46.51 |
| PGSC0003DMT400013629 | Potato | nucleus | 31.24 | 45.73 |
| CDY06664 | Canola | nucleus | 40.09 | 44.91 |
| PGSC0003DMT400051660 | Potato | nucleus | 47.09 | 44.69 |
| KRH71326 | Soybean | mitochondrion, nucleus | 44.76 | 44.55 |
| GSMUA_Achr9P10710_001 | Banana | nucleus | 41.03 | 44.22 |
| KRH32110 | Soybean | nucleus | 43.82 | 43.82 |
| GSMUA_Achr4P17750_001 | Banana | nucleus | 36.36 | 40.1 |
| Os12t0600200-03 | Rice | cytosol, nucleus | 31.24 | 38.95 |
| GSMUA_Achr5P03230_001 | Banana | nucleus | 39.39 | 38.41 |
| Os03t0741700-00 | Rice | cytosol | 16.78 | 37.5 |
| TraesCS5B01G382100.1 | Wheat | nucleus | 42.19 | 35.08 |
| TraesCS5A01G378600.1 | Wheat | nucleus | 40.79 | 34.45 |
| TraesCS5D01G388500.1 | Wheat | nucleus | 41.72 | 34.42 |
| HORVU5Hr1G093720.3 | Barley | nucleus | 41.49 | 34.17 |
| TraesCS5D01G391100.1 | Wheat | mitochondrion | 29.6 | 33.87 |
| TraesCS5A01G381800.1 | Wheat | mitochondrion | 29.6 | 33.87 |
| KXG37982 | Sorghum | nucleus | 39.39 | 32.75 |
| TraesCS5B01G385300.1 | Wheat | mitochondrion | 30.54 | 32.75 |
| TraesCS5D01G069800.1 | Wheat | nucleus | 35.9 | 32.63 |
| Zm00001d030985_P001 | Maize | nucleus | 36.13 | 32.56 |
| Zm00001d041405_P001 | Maize | nucleus | 36.83 | 32.51 |
| TraesCS5A01G058000.1 | Wheat | nucleus | 35.66 | 32.42 |
| TraesCS5B01G065600.1 | Wheat | cytosol | 34.97 | 31.78 |
| Zm00001d033322_P001 | Maize | nucleus | 38.93 | 31.75 |
| HORVU5Hr1G014430.6 | Barley | nucleus | 34.97 | 31.65 |
| Os03t0632800-01 | Rice | nucleus | 31.7 | 31.48 |
| OQU79520 | Sorghum | nucleus | 36.83 | 28.62 |
| KXG37592 | Sorghum | mitochondrion, nucleus | 32.4 | 28.48 |
| CDY61240 | Canola | nucleus | 11.89 | 28.33 |
| HORVU5Hr1G094160.2 | Barley | plastid | 29.14 | 28.22 |
| Zm00001d013303_P001 | Maize | nucleus | 25.17 | 27.76 |
| Zm00001d033967_P001 | Maize | nucleus | 23.54 | 26.44 |
| CDX94870 | Canola | nucleus | 23.31 | 22.27 |
| CDX92974 | Canola | cytosol | 23.78 | 22.03 |
Protein Annotations
| EnsemblPlants:CDY23989 | EnsemblPlantsGene:GSBRNA2T00024505001 | PANTHER:PTHR10825 | PANTHER:PTHR10825:SF70 | ProteinID:CDY23989 | ProteinID:CDY23989.1 |
| SEG:seg | UniParc:UPI0004EE7311 | UniProt:A0A078GF62 | MapMan:12.3.5.1.1.1 | : | : |
Description
BnaC03g17020DBnaC03g17020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GF62]
Coordinates
chrLK032152:-:355721..358459
Molecular Weight (calculated)
48388.7 Da
IEP (calculated)
10.204
GRAVY (calculated)
-0.773
Length
429 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGEKMGRVK RERVVVACMH DLSPLRQSPS AFTPIFFFFN AVCRKCIYYE KITEDEIECC PVCDIDLGGA PLDKLRPDHI LQDLRAKIFP LKRKRESSIT
101: LPARRKERSI SSLVVNTPRL SAQTGTTGKR SKSLVRKDVR GNGSFTKRAV KKEEESGDGH TESASSPETL QKYTQNKKQS SYAEANQSLS NRRNKDVDEP
201: WDSKLHLWKP LNFLVDVANG TKSSTSQGLD PKSENGNASH NDVHGSKTKT KDHKRKCKLE EEISKNGDPT TSEPAKLKRT RRTRRKRSST FGDSRIPSLQ
301: DAASPKQERR NGPVWFSLVA SNNQAAGLRE GETSLPQIPA NYLRIREGNI PVSFIQKYLM RKLDLKSETE VEIRCMGEAV IPTLELRSLV ELWLETTSKH
401: ERVAATIGSS AKEFVMVLVY ARKLPECNN
101: LPARRKERSI SSLVVNTPRL SAQTGTTGKR SKSLVRKDVR GNGSFTKRAV KKEEESGDGH TESASSPETL QKYTQNKKQS SYAEANQSLS NRRNKDVDEP
201: WDSKLHLWKP LNFLVDVANG TKSSTSQGLD PKSENGNASH NDVHGSKTKT KDHKRKCKLE EEISKNGDPT TSEPAKLKRT RRTRRKRSST FGDSRIPSLQ
301: DAASPKQERR NGPVWFSLVA SNNQAAGLRE GETSLPQIPA NYLRIREGNI PVSFIQKYLM RKLDLKSETE VEIRCMGEAV IPTLELRSLV ELWLETTSKH
401: ERVAATIGSS AKEFVMVLVY ARKLPECNN
001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN
Arabidopsis Description
DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.