Factsheet for Zm00001d033322_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000402_P001
Zm00001d003996_P001
Zm00001d005653_P001
Zm00001d006417_P002
Zm00001d010048_P004
Zm00001d016683_P001
Zm00001d020233_P001
Zm00001d021532_P001
Zm00001d025208_P002
Zm00001d025338_P001
Zm00001d032283_P004
Zm00001d043199_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06770.1	Zm00001d010048_P004	AT5G05410.1	18552202
AT2G30580.1	Zm00001d006417_P002	AT1G30860.1	21798944
AT2G30580.1	Zm00001d021532_P001	AT1G30860.1	21798944
AT2G30580.1	Zm00001d005653_P001	AT2G46550.1	21798944
AT2G30580.1	Zm00001d020233_P001	AT2G46550.1	21798944
AT2G30580.1	Zm00001d032283_P004	AT2G46550.1	21798944
AT2G30580.1	Zm00001d016683_P001	AT3G09980.1	21798944
AT2G30580.1	Zm00001d025338_P001	AT3G09980.1	21798944
AT2G30580.1	Zm00001d010048_P004	AT5G05410.1	18552202
AT2G30580.1	Zm00001d000402_P001	AT5G22310.1	21798944
AT2G30580.1	Zm00001d003996_P001	AT5G22310.1	21798944
AT2G30580.1	Zm00001d025208_P002	AT5G22310.1	21798944
AT3G23060.1	Zm00001d043199_P001	AT5G45490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG37982	Sorghum	nucleus	75.29	76.74
TraesCS5A01G378600.1	Wheat	nucleus	55.7	57.68
HORVU5Hr1G093720.3	Barley	nucleus	56.84	57.39
Os03t0632800-01	Rice	nucleus	45.63	55.56
TraesCS5D01G388500.1	Wheat	nucleus	54.75	55.38
TraesCS5B01G382100.1	Wheat	nucleus	53.61	54.65
GSMUA_Achr9P10710_001	Banana	nucleus	39.16	51.76
Zm00001d030985_P001	Maize	nucleus	46.77	51.68
Zm00001d041405_P001	Maize	nucleus	46.2	50.0
VIT_07s0141g00610.t01	Wine grape	nucleus	38.78	47.44
Solyc09g065990.2.1	Tomato	nucleus	37.64	46.05
PGSC0003DMT400038984	Potato	nucleus	37.26	45.58
KRG95629	Soybean	nucleus	36.88	45.33
KRG92687	Soybean	nucleus	37.07	45.03
GSMUA_Achr4P17750_001	Banana	nucleus	33.27	44.99
AT2G30580.1	Thale cress	nucleus	35.74	44.76
KRH67309	Soybean	nucleus	37.45	44.27
KRH34095	Soybean	nucleus	36.31	44.21
VIT_14s0081g00070.t01	Wine grape	nucleus	37.64	44.1
GSMUA_Achr5P03230_001	Banana	nucleus	36.88	44.09
Solyc06g084040.2.1	Tomato	nucleus	35.74	43.62
CDY47131	Canola	nucleus	34.03	42.93
Bra022807.1-P	Field mustard	cytosol	5.7	42.86
CDY29659	Canola	nucleus	34.03	42.52
Solyc06g008600.2.1	Tomato	nucleus	33.65	42.34
CDX97807	Canola	nucleus	33.27	42.07
CDY10748	Canola	nucleus	33.65	42.04
KRH32110	Soybean	nucleus	34.22	41.96
AT1G06770.1	Thale cress	nucleus	33.27	41.57
Bra018304.1-P	Field mustard	nucleus	34.03	41.44
KRH71326	Soybean	mitochondrion, nucleus	33.84	41.3
PGSC0003DMT400051660	Potato	nucleus	34.6	40.27
Zm00001d034468_P001	Maize	nucleus	29.47	40.05
CDY23989	Canola	nucleus	31.75	38.93
PGSC0003DMT400013629	Potato	nucleus	21.1	37.88
VIT_05s0020g04730.t01	Wine grape	nucleus	33.84	37.55
Bra021651.1-P	Field mustard	nucleus	25.1	37.5
Bra015526.1-P	Field mustard	nucleus	15.21	32.65
CDY06664	Canola	nucleus	23.57	32.38
Zm00001d033967_P001	Maize	nucleus	22.05	30.37
Solyc01g020110.1.1	Tomato	endoplasmic reticulum	8.56	30.0
CDY61240	Canola	nucleus	10.08	29.44
Zm00001d013303_P001	Maize	nucleus	21.67	29.31
Bra015525.1-P	Field mustard	cytosol	23.0	28.88
KRG92425	Soybean	nucleus	23.19	28.64
KRH34379	Soybean	nucleus	22.43	27.06
PGSC0003DMT400087291	Potato	nucleus	15.02	25.4
CDX94870	Canola	nucleus	19.96	23.39
Bra001901.1-P	Field mustard	nucleus	20.15	22.89
AT3G23060.1	Thale cress	nucleus	20.53	22.5
PGSC0003DMT400010761	Potato	nucleus	20.72	22.06
CDX92974	Canola	cytosol	19.2	21.81
Solyc09g083300.1.1	Tomato	nucleus, plastid	11.03	21.72
Solyc09g083310.1.1	Tomato	nucleus	15.97	21.0
PGSC0003DMT400015657	Potato	nucleus, plastid	15.4	20.51
PGSC0003DMT400087288	Potato	plastid	6.46	20.48
Zm00001d018972_P005	Maize	nucleus, plastid	16.54	17.16
Zm00001d031900_P001	Maize	cytosol	8.75	15.7

Protein Annotations

EntrezGene:103643715	MapMan:12.3.5.1.1.1	Gene3D:3.30.40.10	UniProt:A0A1D6KXR2	GO:GO:0003674	GO:GO:0003824
GO:GO:0016874	InterPro:IPR001841	InterPro:IPR013083	ProteinID:ONM07237.1	PFAM:PF13923	ScanProsite:PS00518
PFscan:PS50089	PANTHER:PTHR10825	PANTHER:PTHR10825:SF47	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000221B049
EnsemblPlantsGene:Zm00001d033322	EnsemblPlants:Zm00001d033322_P001	EnsemblPlants:Zm00001d033322_T001	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS
SEG:seg	:	:	:	:	:

Description

E3 ubiquitin protein ligase DRIP2

Coordinates

chr1:+:258954523..258960982

Molecular Weight (calculated)

57492.3 Da

IEP (calculated)

9.918

GRAVY (calculated)

-0.699

Length

526 amino acids

Sequence
(BLAST)

001: MQPGPTSPPH ESPSPPHEVT PQEEPATLPL PGEEAQPQGQ ADDGDAVKAA AGAREDRNDR SGATASARGR KRRRRGGTSS TSPSPFPSPA AAAGTTRGVV
101: MVKRDLLARC MTCPLCRRLL RDATTISECL HTFCRKCIYQ KFDDEEVECC PVCKIDLGCT PTEKLRADHS LQDVRSKLFP FKRKKINAEE VSSSISLPTK
201: IKERSISSLV VDTPKVKPTG LTGRRTRAVA RKAAAVATAT VTLHELRPVI EDPVKKEIDS CDSHPHDSNL PASSSKAPQI RRQISPNVEA SNRSSNKDTE
301: GDSNDELADK SELWRPLNCL VEAANRTKSF RSSSQSPVVK GEQPNGSTSS TFASKAKARE NLEKSKIQDD KKDVPMPPVL PKRRAQGTAR KKRDRLQAPT
401: DVKPDAAVAQ NAKKFSSIWF SLIASFDQQG DPPLPQIPSH YLRIKDGNIP ASSILKYLMQ KLSLPSESEV EIKCCEQPVN PSQPLRNLVE LWLKGRATQT
501: TQTMTGSSAK EFVMVLTYGR PKAPAM

Best Arabidopsis Sequence Match ( AT2G30580.2 )
(BLAST)

001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN

Arabidopsis Description

DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.