Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g084040.2.1 | Tomato | nucleus | 92.04 | 96.52 |
| PGSC0003DMT400038984 | Potato | nucleus | 70.58 | 74.19 |
| VIT_07s0141g00610.t01 | Wine grape | nucleus | 64.38 | 67.67 |
| PGSC0003DMT400013629 | Potato | nucleus | 41.15 | 63.48 |
| KRG95629 | Soybean | nucleus | 56.19 | 59.35 |
| KRH67309 | Soybean | nucleus | 55.75 | 56.63 |
| Bra022807.1-P | Field mustard | cytosol | 8.41 | 54.29 |
| CDY47131 | Canola | nucleus | 48.89 | 53.0 |
| KRH32110 | Soybean | nucleus | 50.22 | 52.91 |
| AT2G30580.1 | Thale cress | nucleus | 48.89 | 52.62 |
| KRH71326 | Soybean | mitochondrion, nucleus | 50.0 | 52.44 |
| CDY10748 | Canola | nucleus | 48.45 | 52.02 |
| AT1G06770.1 | Thale cress | nucleus | 47.35 | 50.83 |
| CDX97807 | Canola | nucleus | 46.24 | 50.24 |
| CDY29659 | Canola | nucleus | 46.68 | 50.12 |
| Bra018304.1-P | Field mustard | nucleus | 47.79 | 50.0 |
| GSMUA_Achr9P10710_001 | Banana | nucleus | 43.14 | 48.99 |
| CDY23989 | Canola | nucleus | 44.69 | 47.09 |
| Os03t0741700-00 | Rice | cytosol | 19.69 | 46.35 |
| Bra021651.1-P | Field mustard | nucleus | 35.62 | 45.74 |
| GSMUA_Achr4P17750_001 | Banana | nucleus | 38.05 | 44.22 |
| GSMUA_Achr5P03230_001 | Banana | nucleus | 42.92 | 44.09 |
| Os12t0600200-03 | Rice | cytosol, nucleus | 29.42 | 38.66 |
| Bra015526.1-P | Field mustard | nucleus | 20.58 | 37.96 |
| TraesCS5A01G378600.1 | Wheat | nucleus | 42.48 | 37.8 |
| TraesCS5D01G069800.1 | Wheat | nucleus | 39.16 | 37.5 |
| TraesCS5B01G382100.1 | Wheat | nucleus | 42.7 | 37.4 |
| TraesCS5D01G388500.1 | Wheat | nucleus | 42.92 | 37.31 |
| TraesCS5A01G058000.1 | Wheat | nucleus | 38.94 | 37.29 |
| Os03t0632800-01 | Rice | nucleus | 35.62 | 37.27 |
| HORVU5Hr1G093720.3 | Barley | nucleus | 42.92 | 37.24 |
| HORVU5Hr1G014430.6 | Barley | nucleus | 38.94 | 37.13 |
| CDY06664 | Canola | nucleus | 31.19 | 36.81 |
| TraesCS5B01G065600.1 | Wheat | cytosol | 38.27 | 36.65 |
| Zm00001d041405_P001 | Maize | nucleus | 38.27 | 35.6 |
| Zm00001d030985_P001 | Maize | nucleus | 37.39 | 35.5 |
| KXG37982 | Sorghum | nucleus | 40.04 | 35.08 |
| Zm00001d033322_P001 | Maize | nucleus | 40.27 | 34.6 |
| TraesCS5A01G381800.1 | Wheat | mitochondrion | 27.43 | 33.07 |
| TraesCS5D01G391100.1 | Wheat | mitochondrion | 27.43 | 33.07 |
| TraesCS5B01G385300.1 | Wheat | mitochondrion | 28.76 | 32.5 |
| PGSC0003DMT400087291 | Potato | nucleus | 21.68 | 31.51 |
| Bra015525.1-P | Field mustard | cytosol | 29.2 | 31.5 |
| OQU79520 | Sorghum | nucleus | 37.61 | 30.8 |
| Zm00001d013303_P001 | Maize | nucleus | 25.44 | 29.56 |
| KXG37592 | Sorghum | mitochondrion, nucleus | 31.64 | 29.3 |
| Zm00001d033967_P001 | Maize | nucleus | 24.34 | 28.8 |
| HORVU5Hr1G094160.2 | Barley | plastid | 27.88 | 28.44 |
| PGSC0003DMT400010761 | Potato | nucleus | 25.66 | 23.48 |
| PGSC0003DMT400087288 | Potato | plastid | 7.96 | 21.69 |
| PGSC0003DMT400015657 | Potato | nucleus, plastid | 17.7 | 20.25 |
Protein Annotations
| EntrezGene:102589674 | MapMan:12.3.5.1.1.1 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | UniProt:M1BS01 |
| PFAM:PF13923 | EnsemblPlantsGene:PGSC0003DMG400020061 | PGSC:PGSC0003DMG400020061 | EnsemblPlants:PGSC0003DMT400051660 | ScanProsite:PS00518 | PFscan:PS50089 |
| PANTHER:PTHR10825 | PANTHER:PTHR10825:SF70 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000296259C | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | : | : | : | : |
Description
E3 ubiquitin protein ligase DRIP1 [Source:PGSC_GENE;Acc:PGSC0003DMG400020061]
Coordinates
chr6:-:58866021..58872078
Molecular Weight (calculated)
50339.3 Da
IEP (calculated)
9.580
GRAVY (calculated)
-0.522
Length
452 amino acids
Sequence
(BLAST)
(BLAST)
001: MPNQVVKVKR EKIAACITCP LCHKLFRDAT TISECLHTFC RKCIYKKLSD EETECCPICN IDLGCVPLEK LRSYIFTIAR FIFSVNPNVQ RPDHNLQDIR
101: AKIFPYKRQK VQAPEVVPSV TPPIRRKERS LSSLVVSTPR VSTQTGTTGR RSKSVARKAL RGSTFSVEKP VRKEGSSGED QLDSASSPET LNKFTQNIRQ
201: NSSSAELFGQ PTPDNETENG MDLWEGQVDL WKPLNCLVEA ANRSKSAKFT SPGSTAKSEY LHSLDNEAHV RKNKVKKHGL ETKVQDNKNN SGPAHLGSDK
301: PKKMRRNSQK KASESGGFSI SPQTVLDAIA TKCERRNNPI WFSLVASEDR EGDAPLPQIS AGYLRIKNGN VPVSYIQKYL MKKLDLISED EVEIRCMGQL
401: IAPTLQVNTL VDMWLETTTP ESVPVITGSS AKDFVMVLSY AHKVPVPVHP AS
101: AKIFPYKRQK VQAPEVVPSV TPPIRRKERS LSSLVVSTPR VSTQTGTTGR RSKSVARKAL RGSTFSVEKP VRKEGSSGED QLDSASSPET LNKFTQNIRQ
201: NSSSAELFGQ PTPDNETENG MDLWEGQVDL WKPLNCLVEA ANRSKSAKFT SPGSTAKSEY LHSLDNEAHV RKNKVKKHGL ETKVQDNKNN SGPAHLGSDK
301: PKKMRRNSQK KASESGGFSI SPQTVLDAIA TKCERRNNPI WFSLVASEDR EGDAPLPQIS AGYLRIKNGN VPVSYIQKYL MKKLDLISED EVEIRCMGQL
401: IAPTLQVNTL VDMWLETTTP ESVPVITGSS AKDFVMVLSY AHKVPVPVHP AS
001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN
Arabidopsis Description
DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.