Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47131 | Canola | nucleus | 97.15 | 98.08 |
| Bra018304.1-P | Field mustard | nucleus | 96.2 | 93.75 |
| AT2G30580.1 | Thale cress | nucleus | 83.14 | 83.33 |
| CDX97807 | Canola | nucleus | 78.15 | 79.09 |
| CDY29659 | Canola | nucleus | 78.86 | 78.86 |
| CDY23989 | Canola | nucleus | 75.77 | 74.36 |
| VIT_07s0141g00610.t01 | Wine grape | nucleus | 55.58 | 54.42 |
| PGSC0003DMT400038984 | Potato | nucleus | 55.11 | 53.95 |
| KRG95629 | Soybean | nucleus | 53.92 | 53.04 |
| Solyc09g065990.2.1 | Tomato | nucleus | 53.92 | 52.79 |
| KRH67309 | Soybean | nucleus | 55.11 | 52.13 |
| Solyc06g008600.2.1 | Tomato | nucleus | 51.07 | 51.44 |
| Solyc06g084040.2.1 | Tomato | nucleus | 52.02 | 50.81 |
| PGSC0003DMT400051660 | Potato | nucleus | 52.02 | 48.45 |
| KRH71326 | Soybean | mitochondrion, nucleus | 49.41 | 48.26 |
| KRH32110 | Soybean | nucleus | 48.93 | 48.02 |
| GSMUA_Achr9P10710_001 | Banana | nucleus | 45.13 | 47.74 |
| PGSC0003DMT400013629 | Potato | nucleus | 32.3 | 46.42 |
| Os03t0741700-00 | Rice | cytosol | 19.71 | 43.23 |
| GSMUA_Achr5P03230_001 | Banana | nucleus | 44.42 | 42.5 |
| CDY06664 | Canola | nucleus | 38.48 | 42.3 |
| GSMUA_Achr4P17750_001 | Banana | nucleus | 37.53 | 40.62 |
| TraesCS5D01G391100.1 | Wheat | mitochondrion | 32.78 | 36.8 |
| TraesCS5B01G382100.1 | Wheat | nucleus | 44.89 | 36.63 |
| Os12t0600200-03 | Rice | cytosol, nucleus | 29.93 | 36.63 |
| TraesCS5A01G381800.1 | Wheat | mitochondrion | 32.54 | 36.53 |
| TraesCS5A01G378600.1 | Wheat | nucleus | 43.71 | 36.22 |
| TraesCS5D01G388500.1 | Wheat | nucleus | 44.42 | 35.96 |
| HORVU5Hr1G093720.3 | Barley | nucleus | 43.94 | 35.51 |
| Zm00001d041405_P001 | Maize | nucleus | 39.91 | 34.57 |
| KXG37982 | Sorghum | nucleus | 42.28 | 34.5 |
| TraesCS5D01G069800.1 | Wheat | nucleus | 38.48 | 34.32 |
| Os03t0632800-01 | Rice | nucleus | 35.15 | 34.26 |
| TraesCS5B01G385300.1 | Wheat | mitochondrion | 32.54 | 34.25 |
| Zm00001d030985_P001 | Maize | nucleus | 38.72 | 34.24 |
| TraesCS5A01G058000.1 | Wheat | nucleus | 38.0 | 33.9 |
| Zm00001d033322_P001 | Maize | nucleus | 42.04 | 33.65 |
| TraesCS5B01G065600.1 | Wheat | cytosol | 37.53 | 33.47 |
| HORVU5Hr1G014430.6 | Barley | nucleus | 36.82 | 32.7 |
| KXG37592 | Sorghum | mitochondrion, nucleus | 35.15 | 30.33 |
| Zm00001d013303_P001 | Maize | nucleus | 27.79 | 30.08 |
| OQU79520 | Sorghum | nucleus | 39.19 | 29.89 |
| HORVU5Hr1G094160.2 | Barley | plastid | 31.35 | 29.8 |
| CDY61240 | Canola | nucleus | 12.59 | 29.44 |
| Zm00001d033967_P001 | Maize | nucleus | 26.37 | 29.06 |
| CDX94870 | Canola | nucleus | 26.84 | 25.17 |
| CDX92974 | Canola | cytosol | 26.37 | 23.97 |
Protein Annotations
| MapMan:12.3.5.1.1.1 | Gene3D:3.30.40.10 | GO:A0A078FF76 | UniProt:A0A078FF76 | EnsemblPlants:CDY10748 | ProteinID:CDY10748 |
| ProteinID:CDY10748.1 | EnsemblPlantsGene:GSBRNA2T00048563001 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13923 | ScanProsite:PS00518 |
| PFscan:PS50089 | PANTHER:PTHR10825 | PANTHER:PTHR10825:SF70 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EEE815 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : | : |
Description
BnaA05g11880DBnaA05g11880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FF76]
Coordinates
chrLK032006:+:423612..428075
Molecular Weight (calculated)
47472.6 Da
IEP (calculated)
9.605
GRAVY (calculated)
-0.739
Length
421 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGEMVAKVK RETVVACMTC SLCDNLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGAPLE KLRLPDHILQ DLKAKIFTPK RKRERAPEVV
101: SSITLPARRK ERSISSLVVD TPRVSAQTGT TGKRTKSLMR KDVRGSGSFT KRTVKKEEEI GDDHTESGSS PETLKDFTQS KRQVKKSSYA EPSQSLSNRR
201: NKDGAEPWDS KLNLWKPLNF LVDVANGTKS EHGNASHADV QGNKTKTKDY KRKCKLEEEI RNNGDPTTSE TATVKRTRRT RRKRSSTFGD SRIPPLPDSE
301: SLKQERRKGP VWFSLVASNN QEGETSLPQI PANYLRIRDG NIPVSFIQKY LMRKLDLKSE TEVEIRCMGE AVIPTLELHS LVELWLETTS KHERVAATIG
401: SSAKEFVMVL AYARKVPECN N
101: SSITLPARRK ERSISSLVVD TPRVSAQTGT TGKRTKSLMR KDVRGSGSFT KRTVKKEEEI GDDHTESGSS PETLKDFTQS KRQVKKSSYA EPSQSLSNRR
201: NKDGAEPWDS KLNLWKPLNF LVDVANGTKS EHGNASHADV QGNKTKTKDY KRKCKLEEEI RNNGDPTTSE TATVKRTRRT RRKRSSTFGD SRIPPLPDSE
301: SLKQERRKGP VWFSLVASNN QEGETSLPQI PANYLRIRDG NIPVSFIQKY LMRKLDLKSE TEVEIRCMGE AVIPTLELHS LVELWLETTS KHERVAATIG
401: SSAKEFVMVL AYARKVPECN N
001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN
Arabidopsis Description
DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.