Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70151 | Canola | nucleus | 83.53 | 84.55 |
| CDY04950 | Canola | nucleus | 66.17 | 68.21 |
| CDY52149 | Canola | nucleus | 65.87 | 67.07 |
| AT5G05410.1 | Thale cress | nucleus | 65.57 | 65.37 |
| CDY67039 | Canola | nucleus | 49.1 | 56.16 |
| CDY36289 | Canola | nucleus | 48.8 | 56.01 |
| CDY00987 | Canola | nucleus | 49.7 | 53.38 |
| CDY08557 | Canola | nucleus | 47.9 | 50.96 |
| CDX73896 | Canola | nucleus | 52.1 | 45.55 |
| CDY33815 | Canola | nucleus | 15.57 | 45.22 |
| CDX93190 | Canola | nucleus | 24.55 | 38.5 |
| CDY52924 | Canola | nucleus | 32.04 | 31.85 |
| CDY71905 | Canola | nucleus | 23.05 | 31.56 |
| CDY39036 | Canola | nucleus | 18.56 | 31.31 |
| CDY47519 | Canola | nucleus | 19.16 | 31.07 |
| HORVU6Hr1G050500.2 | Barley | nucleus | 27.84 | 31.0 |
| CDY70626 | Canola | nucleus | 18.86 | 30.88 |
| CDX68128 | Canola | nucleus | 18.86 | 30.88 |
| CDY20377 | Canola | nucleus | 18.26 | 30.81 |
| CDY54455 | Canola | nucleus | 22.75 | 30.77 |
| CDY64211 | Canola | nucleus, plastid | 18.86 | 30.58 |
| HORVU6Hr1G050520.2 | Barley | nucleus | 20.96 | 29.54 |
| KXG21735 | Sorghum | nucleus | 29.34 | 29.17 |
| CDY00719 | Canola | nucleus | 20.66 | 29.11 |
| CDY06088 | Canola | nucleus | 22.16 | 27.41 |
| CDX72012 | Canola | nucleus | 21.86 | 26.74 |
| Zm00001d010048_P004 | Maize | nucleus | 29.04 | 26.43 |
| TraesCS1D01G223600.2 | Wheat | nucleus | 30.84 | 26.34 |
| TraesCS1B01G235100.2 | Wheat | nucleus | 30.54 | 26.29 |
| CDY61527 | Canola | nucleus | 23.05 | 26.19 |
| CDX70820 | Canola | nucleus | 21.86 | 26.07 |
| CDY52095 | Canola | nucleus | 20.06 | 25.19 |
| TraesCS1A01G221900.1 | Wheat | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 30.54 | 25.06 |
| CDX88955 | Canola | nucleus | 19.16 | 24.62 |
| CDY58117 | Canola | nucleus | 21.26 | 24.57 |
| CDY02629 | Canola | nucleus | 20.96 | 24.31 |
| CDX92610 | Canola | nucleus | 21.86 | 23.86 |
| HORVU1Hr1G060490.5 | Barley | plasma membrane | 31.14 | 23.01 |
| CDY25420 | Canola | nucleus | 21.86 | 22.26 |
| CDY52427 | Canola | nucleus | 17.37 | 17.96 |
| CDY54991 | Canola | nucleus | 17.96 | 17.8 |
| CDY07614 | Canola | nucleus | 16.77 | 16.67 |
| CDY33814 | Canola | nucleus | 3.29 | 12.64 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | GO:A0A078EHL8 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDX98843 |
| ProteinID:CDX98843 | ProteinID:CDX98843.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00106944001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31241 | PANTHER:PTHR31241:SF2 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0004EEDB44 | SEG:seg | : | : | : | : |
Description
BnaC09g49920D
Coordinates
chrLK031907:+:241514..243151
Molecular Weight (calculated)
37054.9 Da
IEP (calculated)
4.727
GRAVY (calculated)
-0.816
Length
334 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVYDHSGEI NKTEFDTTKK RKSRSRRDGI TVADRIKMWK EYNDTVEESP SKKRRVPAKG SKKGCMKGKG GPENGGCSFR GVRQRTWGKW VAEIREPNRG
101: SRLWLGTFPT AEKAAAAYDE AAKAMYGPLA RVNFPQSCSV SDVASTSSRS EVCTVEPPGV VRVKTEDTDC ESRPFFVDRV ESDANAGEEE MKVDATGVIQ
201: GKDWLSELEQ ECWTGLLEEK QKLKEQEIAA AGNFQRQPDS LSVSDYGWPA DLYQNQWDSS EMFDVSELLG DLNGDIFTGS NQNQCLGDNV GGGLPEPEKQ
301: QLQSLGSDYG FPPLQHEAKD GSDFFDLSFL NAKN
101: SRLWLGTFPT AEKAAAAYDE AAKAMYGPLA RVNFPQSCSV SDVASTSSRS EVCTVEPPGV VRVKTEDTDC ESRPFFVDRV ESDANAGEEE MKVDATGVIQ
201: GKDWLSELEQ ECWTGLLEEK QKLKEQEIAA AGNFQRQPDS LSVSDYGWPA DLYQNQWDSS EMFDVSELLG DLNGDIFTGS NQNQCLGDNV GGGLPEPEKQ
301: QLQSLGSDYG FPPLQHEAKD GSDFFDLSFL NAKN
001: MAVYDQSGDR NRTQIDTSRK RKSRSRGDGT TVAERLKRWK EYNETVEEVS TKKRKVPAKG SKKGCMKGKG GPENSRCSFR GVRQRIWGKW VAEIREPNRG
101: SRLWLGTFPT AQEAASAYDE AAKAMYGPLA RLNFPRSDAS EVTSTSSQSE VCTVETPGCV HVKTEDPDCE SKPFSGGVEP MYCLENGAEE MKRGVKADKH
201: WLSEFEHNYW SDILKEKEKQ KEQGIVETCQ QQQQDSLSVA DYGWPNDVDQ SHLDSSDMFD VDELLRDLNG DDVFAGLNQD RYPGNSVANG SYRPESQQSG
301: FDPLQSLNYG IPPFQLEGKD GNGFFDDLSY LDLEN
101: SRLWLGTFPT AQEAASAYDE AAKAMYGPLA RLNFPRSDAS EVTSTSSQSE VCTVETPGCV HVKTEDPDCE SKPFSGGVEP MYCLENGAEE MKRGVKADKH
201: WLSEFEHNYW SDILKEKEKQ KEQGIVETCQ QQQQDSLSVA DYGWPNDVDQ SHLDSSDMFD VDELLRDLNG DDVFAGLNQD RYPGNSVANG SYRPESQQSG
301: FDPLQSLNYG IPPFQLEGKD GNGFFDDLSY LDLEN
Arabidopsis Description
DREB2ADehydration-responsive element-binding protein 2A [Source:UniProtKB/Swiss-Prot;Acc:O82132]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.