Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G68560.1 | CDX70151 | AT5G05410.1 | 18552202 |
| AT1G68560.1 | CDX98843 | AT5G05410.1 | 18552202 |
| AT1G68560.1 | CDY04950 | AT5G05410.1 | 18552202 |
| AT1G68560.1 | CDY52149 | AT5G05410.1 | 18552202 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96008 | Canola | extracellular, vacuole | 98.62 | 98.5 |
| CDY44885 | Canola | extracellular, vacuole | 95.85 | 94.33 |
| CDX81531 | Canola | extracellular, vacuole | 95.51 | 93.99 |
| Bra004319.1-P | Field mustard | extracellular, vacuole | 98.27 | 92.12 |
| CDY04236 | Canola | extracellular, vacuole | 89.86 | 89.97 |
| CDY07378 | Canola | extracellular, vacuole | 89.75 | 88.62 |
| AT1G68560.1 | Thale cress | extracellular, vacuole | 88.71 | 84.15 |
| AT3G45940.1 | Thale cress | vacuole | 81.57 | 81.57 |
| KRH75375 | Soybean | endoplasmic reticulum | 75.23 | 70.37 |
| KRH45278 | Soybean | endoplasmic reticulum | 74.42 | 69.76 |
| KRH35960 | Soybean | endoplasmic reticulum | 73.5 | 68.97 |
| VIT_01s0011g03450.t01 | Wine grape | extracellular | 72.35 | 67.97 |
| PGSC0003DMT400041054 | Potato | endoplasmic reticulum, extracellular, vacuole | 72.23 | 67.42 |
| PGSC0003DMT400037696 | Potato | extracellular | 71.89 | 67.24 |
| Solyc05g009470.2.1 | Tomato | extracellular | 71.77 | 67.13 |
| Solyc04g007150.2.1 | Tomato | extracellular | 45.97 | 66.61 |
| GSMUA_Achr1P20950_001 | Banana | golgi, vacuole | 60.02 | 65.87 |
| EES02554 | Sorghum | extracellular, vacuole | 65.55 | 61.31 |
| Zm00001d039994_P001 | Maize | extracellular | 65.09 | 60.95 |
| Os01t0130400-01 | Rice | extracellular | 64.52 | 60.09 |
| TraesCS3D01G038300.1 | Wheat | golgi | 64.52 | 59.07 |
| Solyc04g007160.1.1 | Tomato | extracellular | 18.2 | 58.74 |
| TraesCS3B01G041700.1 | Wheat | unclear | 63.59 | 58.41 |
| TraesCS3A01G042100.1 | Wheat | nucleus | 63.82 | 58.38 |
| HORVU3Hr1G003540.2 | Barley | extracellular, vacuole | 63.82 | 58.07 |
| HORVU2Hr1G062940.1 | Barley | extracellular, plastid, vacuole | 6.8 | 55.66 |
| CDX78437 | Canola | extracellular, vacuole | 45.39 | 44.17 |
| CDX70414 | Canola | extracellular, plastid, vacuole | 45.16 | 43.65 |
| CDX81200 | Canola | vacuole | 21.54 | 29.17 |
| CDY60045 | Canola | cytosol, nucleus, vacuole | 21.2 | 28.71 |
| CDX84449 | Canola | vacuole | 20.85 | 28.06 |
| CDY43760 | Canola | vacuole | 20.74 | 27.91 |
| CDY18102 | Canola | plastid | 23.39 | 19.01 |
| CDY60313 | Canola | golgi, vacuole | 23.39 | 18.22 |
| CDY56225 | Canola | plasma membrane, plastid, vacuole | 9.79 | 15.29 |
| CDY71267 | Canola | plastid | 4.72 | 14.34 |
Protein Annotations
| Gene3D:2.60.40.1180 | Gene3D:2.60.40.1760 | MapMan:21.2.1.2.5 | Gene3D:3.20.20.80 | GO:A0A078HP93 | UniProt:A0A078HP93 |
| EnsemblPlants:CDY38593 | ProteinID:CDY38593 | ProteinID:CDY38593.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 |
| GO:GO:0005488 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | GO:GO:0016798 |
| GO:GO:0030246 | EnsemblPlantsGene:GSBRNA2T00066277001 | InterPro:Gal_mutarotase_N | InterPro:Gal_mutarotase_sf_dom | InterPro:Glyco_hydro_31 | InterPro:Glyco_hydro_31_AS |
| InterPro:Glyco_hydro_31_N_dom | InterPro:Glyco_hydro_b | InterPro:Glycoside_hydrolase_SF | InterPro:IPR013780 | PFAM:PF01055 | PFAM:PF13802 |
| PFAM:PF16863 | ScanProsite:PS00129 | PANTHER:PTHR22762 | PANTHER:PTHR22762:SF125 | SUPFAM:SSF51011 | SUPFAM:SSF51445 |
| SUPFAM:SSF74650 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EE8948 | : | : |
Description
BnaC06g30160DBnaC06g30160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HP93]
Coordinates
chrLK032427:-:158576..162559
Molecular Weight (calculated)
96995.0 Da
IEP (calculated)
6.904
GRAVY (calculated)
-0.186
Length
868 amino acids
Sequence
(BLAST)
(BLAST)
001: MVTSRIVFSS LSLLVALILC FSPIHCSNTI GKGYRLISIE ESPDGGFIGY LQVKQKNKIY GSDITTLRLY VKHETDTRLR VHITDAKKQR WEVPYNLLPR
101: EQPPPVGKVI GKSRKSPITV QELSGSELIF SYTTDPFSFA VKRRSNGQTL FNTSSNSAFG EMVFKDQYLE ISTSLPKDAS IYGLGENSQA NGIKLVPNEP
201: YTLYTEDVSA INLNTDLYGS HPVYMDLRNV GGKPYAHAVL LLNSNGMDVF YRGTSLTYKV IGGVFDFYFV AGPSPLDVVD QYTSLIGRPA PMPYWSLGFH
301: QCRWGYRNLS VIEDVVDSYQ KAKIPLDVIW NDDDHMDAKK DFTLSPISYP RAKLLNFLDR IHKMGMKYVV INDPGIGVNS SYGVYQRGMA NDVFIKYEGK
401: PFLAQVWPGA VHFPDFLNPK TVSWWGEEIR RFHELVPIDG LWIDMNEINA TGVQAPIGFK TIATSALHYN GVREYDAHSI YGFSETVATH KGLLSIEGKR
501: PFILSRSTFV GSGKYAAHWT GDNQGTWQSL QVSISTMLNF GIFGVPMVGS DICGFYPQPT EELCNRWIEV GAFYPFSRDH ANYYSPRQEL YQWDTVAESA
601: RNALGMRYKI LPYLYTLNYE AHVTGAPIAR PLFFSFPEYT ECYGSSRQFL LGSGLMISPV LEQGKTEVEA LFPPGSWYQM FDMTQAVVSK KGKRVTLPAP
701: LNFVNVHLYQ NTILPMQQGG LVITFPAGAS EGYAKGKLYL DEDELPEMKL GNGQSTYVDF YASVGNGTVK MWSDVKEGKF ALSKGWVIEK VSVLGLRGAG
801: QASEIVINGS PVSNEGKKVE VSLKEHTYVV GLEEEGENKS VMVEVRGLEM LVGKDFSMSW KMGINGAN
101: EQPPPVGKVI GKSRKSPITV QELSGSELIF SYTTDPFSFA VKRRSNGQTL FNTSSNSAFG EMVFKDQYLE ISTSLPKDAS IYGLGENSQA NGIKLVPNEP
201: YTLYTEDVSA INLNTDLYGS HPVYMDLRNV GGKPYAHAVL LLNSNGMDVF YRGTSLTYKV IGGVFDFYFV AGPSPLDVVD QYTSLIGRPA PMPYWSLGFH
301: QCRWGYRNLS VIEDVVDSYQ KAKIPLDVIW NDDDHMDAKK DFTLSPISYP RAKLLNFLDR IHKMGMKYVV INDPGIGVNS SYGVYQRGMA NDVFIKYEGK
401: PFLAQVWPGA VHFPDFLNPK TVSWWGEEIR RFHELVPIDG LWIDMNEINA TGVQAPIGFK TIATSALHYN GVREYDAHSI YGFSETVATH KGLLSIEGKR
501: PFILSRSTFV GSGKYAAHWT GDNQGTWQSL QVSISTMLNF GIFGVPMVGS DICGFYPQPT EELCNRWIEV GAFYPFSRDH ANYYSPRQEL YQWDTVAESA
601: RNALGMRYKI LPYLYTLNYE AHVTGAPIAR PLFFSFPEYT ECYGSSRQFL LGSGLMISPV LEQGKTEVEA LFPPGSWYQM FDMTQAVVSK KGKRVTLPAP
701: LNFVNVHLYQ NTILPMQQGG LVITFPAGAS EGYAKGKLYL DEDELPEMKL GNGQSTYVDF YASVGNGTVK MWSDVKEGKF ALSKGWVIEK VSVLGLRGAG
801: QASEIVINGS PVSNEGKKVE VSLKEHTYVV GLEEEGENKS VMVEVRGLEM LVGKDFSMSW KMGINGAN
001: MASSSSSLAF SLSLLLALIL CFSPTQSYKT IGKGYRLVSI EESPDGGFIG YLQVKQKNKI YGSDITTLRL FVKHETDSRL RVHITDAKQQ RWEVPYNLLP
101: REQPPQVGKV IGKSRKSPIT VQEISGSELI FSYTTDPFTF AVKRRSNHET LFNTTSSLVF KDQYLEISTS LPKEASLYGL GENSQANGIK LVPNEPYTLY
201: TEDVSAINLN TDLYGSHPMY MDLRNVGGKA YAHAVLLLNS NGMDVFYRGD SLTYKVIGGV FDFYFIAGPS PLNVVDQYTQ LIGRPAPMPY WSLGFHQCRW
301: GYHNLSVVED VVDNYKKAKI PLDVIWNDDD HMDGHKDFTL NPVAYPRAKL LAFLDKIHKI GMKYIVINDP GIGVNASYGT FQRAMAADVF IKYEGKPFLA
401: QVWPGPVYFP DFLNPKTVSW WGDEIKRFHD LVPIDGLWID MNEVSNFCSG LCTIPEGKQC PSGEGPGWVC CLDCKNITKT RWDDPPYKIN ATGVVAPVGF
501: KTIATSATHY NGVREYDAHS IYGFSETIAT HKGLLNVQGK RPFILSRSTF VGSGQYAAHW TGDNQGTWQS LQVSISTMLN FGIFGVPMVG SDICGFYPQP
601: TEELCNRWIE VGAFYPFSRD HANYYSPRQE LYQWDTVADS ARNALGMRYK ILPFLYTLNY EAHMTGAPIA RPLFFSFPEY TECYGNSRQF LLGSSFMISP
701: VLEQGKTEVE ALFPPGSWYH MFDMTQAVVS KNGKRVTLPA PLNFVNVHLY QNTILPTQQG GLISKDARTT PFSLVIAFPA GASEGYATGK LYLDEDELPE
801: MKLGNGQSTY VDFYASVGNG TMKMWSQVKE GKFALSKGWV IEKVSVLGLR GAGQVSEIQI NGSPMTKKIE VSSKEHTYVI GLEDEEENKS VMVEVRGLEM
901: LVGKDFNMSW KMGIN
101: REQPPQVGKV IGKSRKSPIT VQEISGSELI FSYTTDPFTF AVKRRSNHET LFNTTSSLVF KDQYLEISTS LPKEASLYGL GENSQANGIK LVPNEPYTLY
201: TEDVSAINLN TDLYGSHPMY MDLRNVGGKA YAHAVLLLNS NGMDVFYRGD SLTYKVIGGV FDFYFIAGPS PLNVVDQYTQ LIGRPAPMPY WSLGFHQCRW
301: GYHNLSVVED VVDNYKKAKI PLDVIWNDDD HMDGHKDFTL NPVAYPRAKL LAFLDKIHKI GMKYIVINDP GIGVNASYGT FQRAMAADVF IKYEGKPFLA
401: QVWPGPVYFP DFLNPKTVSW WGDEIKRFHD LVPIDGLWID MNEVSNFCSG LCTIPEGKQC PSGEGPGWVC CLDCKNITKT RWDDPPYKIN ATGVVAPVGF
501: KTIATSATHY NGVREYDAHS IYGFSETIAT HKGLLNVQGK RPFILSRSTF VGSGQYAAHW TGDNQGTWQS LQVSISTMLN FGIFGVPMVG SDICGFYPQP
601: TEELCNRWIE VGAFYPFSRD HANYYSPRQE LYQWDTVADS ARNALGMRYK ILPFLYTLNY EAHMTGAPIA RPLFFSFPEY TECYGNSRQF LLGSSFMISP
701: VLEQGKTEVE ALFPPGSWYH MFDMTQAVVS KNGKRVTLPA PLNFVNVHLY QNTILPTQQG GLISKDARTT PFSLVIAFPA GASEGYATGK LYLDEDELPE
801: MKLGNGQSTY VDFYASVGNG TMKMWSQVKE GKFALSKGWV IEKVSVLGLR GAGQVSEIQI NGSPMTKKIE VSSKEHTYVI GLEDEEENKS VMVEVRGLEM
901: LVGKDFNMSW KMGIN
Arabidopsis Description
XYL1Alpha-xylosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y7]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.