Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G68560.1 | CDX70151 | AT5G05410.1 | 18552202 |
| AT1G68560.1 | CDX98843 | AT5G05410.1 | 18552202 |
| AT1G68560.1 | CDY04950 | AT5G05410.1 | 18552202 |
| AT1G68560.1 | CDY52149 | AT5G05410.1 | 18552202 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44885 | Canola | extracellular, vacuole | 98.75 | 98.75 |
| CDY38593 | Canola | extracellular, vacuole | 93.99 | 95.51 |
| CDX96008 | Canola | extracellular, vacuole | 93.65 | 95.05 |
| CDY04236 | Canola | extracellular, vacuole | 89.34 | 90.89 |
| CDY07378 | Canola | extracellular, vacuole | 90.25 | 90.56 |
| AT1G68560.1 | Thale cress | extracellular, vacuole | 88.1 | 84.92 |
| AT3G45940.1 | Thale cress | vacuole | 80.05 | 81.34 |
| KRH75375 | Soybean | endoplasmic reticulum | 74.49 | 70.8 |
| KRH45278 | Soybean | endoplasmic reticulum | 74.04 | 70.52 |
| KRH35960 | Soybean | endoplasmic reticulum | 73.13 | 69.73 |
| PGSC0003DMT400041054 | Potato | endoplasmic reticulum, extracellular, vacuole | 72.0 | 68.28 |
| VIT_01s0011g03450.t01 | Wine grape | extracellular | 71.43 | 68.18 |
| PGSC0003DMT400037696 | Potato | extracellular | 71.66 | 68.1 |
| Solyc05g009470.2.1 | Tomato | extracellular | 71.54 | 68.0 |
| GSMUA_Achr1P20950_001 | Banana | golgi, vacuole | 59.64 | 66.5 |
| Solyc04g007150.2.1 | Tomato | extracellular | 44.9 | 66.11 |
| Solyc04g007160.1.1 | Tomato | extracellular | 18.93 | 62.08 |
| EES02554 | Sorghum | extracellular, vacuole | 65.08 | 61.85 |
| Zm00001d039994_P001 | Maize | extracellular | 64.29 | 61.16 |
| Os01t0130400-01 | Rice | extracellular | 64.51 | 61.05 |
| TraesCS3D01G038300.1 | Wheat | golgi | 63.49 | 59.07 |
| HORVU3Hr1G003540.2 | Barley | extracellular, vacuole | 63.61 | 58.8 |
| TraesCS3A01G042100.1 | Wheat | nucleus | 63.27 | 58.8 |
| TraesCS3B01G041700.1 | Wheat | unclear | 62.93 | 58.73 |
| HORVU2Hr1G062940.1 | Barley | extracellular, plastid, vacuole | 6.58 | 54.72 |
| CDX78437 | Canola | extracellular, vacuole | 45.46 | 44.96 |
| CDX70414 | Canola | extracellular, plastid, vacuole | 45.35 | 44.54 |
| CDX81200 | Canola | vacuole | 21.2 | 29.17 |
| CDY60045 | Canola | cytosol, nucleus, vacuole | 20.86 | 28.71 |
| CDX84449 | Canola | vacuole | 20.63 | 28.22 |
| CDY43760 | Canola | vacuole | 20.52 | 28.06 |
| CDY18102 | Canola | plastid | 22.79 | 18.82 |
| CDY60313 | Canola | golgi, vacuole | 22.9 | 18.13 |
| CDY56225 | Canola | plasma membrane, plastid, vacuole | 9.52 | 15.11 |
| CDY71267 | Canola | plastid | 4.88 | 15.04 |
Protein Annotations
| Gene3D:2.60.40.1180 | Gene3D:2.60.40.1760 | MapMan:21.2.1.2.5 | Gene3D:3.20.20.80 | GO:A0A078CWK8 | EnsemblPlants:CDX81531 |
| ProteinID:CDX81531 | ProteinID:CDX81531.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005488 |
| GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | GO:GO:0030246 | EnsemblPlantsGene:GSBRNA2T00135203001 |
| InterPro:Gal_mutarotase_N | InterPro:Gal_mutarotase_sf_dom | InterPro:Glyco_hydro_31 | InterPro:Glyco_hydro_31_AS | InterPro:Glyco_hydro_31_CS | InterPro:Glyco_hydro_b |
| InterPro:Glycoside_hydrolase_SF | InterPro:IPR013780 | PFAM:PF01055 | PFAM:PF16863 | ScanProsite:PS00129 | ScanProsite:PS00707 |
| PANTHER:PTHR22762 | PANTHER:PTHR22762:SF125 | SUPFAM:SSF51011 | SUPFAM:SSF51445 | SUPFAM:SSF74650 | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI0004EF4161 | SEG:seg | : | : | : |
Description
BnaC02g18350D
Coordinates
chrLK031825:-:1038579..1042420
Molecular Weight (calculated)
98281.2 Da
IEP (calculated)
6.934
GRAVY (calculated)
-0.217
Length
882 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSPKTVFSC LSLLVALTLC FAPTHSSNTI GKGYRLISIE ESPDGGFIGY LQVKQKNKIY GSDITTLRLY VKHETDNRLR VHITDAKKQR WEVPYNLLPR
101: DQPPPIGKAI GKSRKTPITV QEISGSELTF SYTTDPFSFA VKRRSNGQTL FNTSSSSNSG FGEMVFKDQY LEISTSLPKD ASLYGLGENS QANGIKLVPN
201: EPYTLYTEDV SAINLNTDLY GSHPVYLDLR NVGGKPYAHA VLLLNSNGMD VFYRGTSLTY KVIGGVFDFY FVAGPSPLDV VDQYTSLIGR PAPMPYWSLG
301: FHQCRWGYRN LSVIEDVVDS YQKAKIPLDV IWNDDDHMNA KKDFTLSPIS YPRAKLLNFL DKIHKMGMKY VVINDPGIGV NSSYGVYQRG MANDVFIKYE
401: GKPFLAQVWP GAVHFPDFLN PKTVAWWGEE IRRFHELVPI DGLWIDMNEI NATGVQAPIG FKTIATSALH YNGVREYDAH SIYGFSETVA THKGLLSIEG
501: KRPFILSRST FVGSGKYAAH WTGDNQGTWQ SLQVSISTML NFGIFGVPMV GADICGFYPQ PTEELCNRWI EVGAFYPFSR DHANYYSPRQ ELYQWATVAE
601: SARNALGMRY KILPYLYTLN YEAHMTGAPI ARPLFFSFPE YTECYGSSRQ FLLGSSLMIS PVLEQGKTEV EALFPPGSWY HMFDMTQAVV SKSGKRVTLP
701: APLNFVNVHL YQNTILPMQQ GGLISKEART TPFNLVITFP AGASEGYATG KLYLDEDELP EMKLGNGQST YVDFYASVGN GTVKMWSQVK EGKFALSKGW
801: VIEKVSVLGL RGAGQASEIE INGSPVANEG KKIEVSSKEH TYVVGLEEEG ENKSVMVEVK GLEILVGKDF NMSWKMGISG AN
101: DQPPPIGKAI GKSRKTPITV QEISGSELTF SYTTDPFSFA VKRRSNGQTL FNTSSSSNSG FGEMVFKDQY LEISTSLPKD ASLYGLGENS QANGIKLVPN
201: EPYTLYTEDV SAINLNTDLY GSHPVYLDLR NVGGKPYAHA VLLLNSNGMD VFYRGTSLTY KVIGGVFDFY FVAGPSPLDV VDQYTSLIGR PAPMPYWSLG
301: FHQCRWGYRN LSVIEDVVDS YQKAKIPLDV IWNDDDHMNA KKDFTLSPIS YPRAKLLNFL DKIHKMGMKY VVINDPGIGV NSSYGVYQRG MANDVFIKYE
401: GKPFLAQVWP GAVHFPDFLN PKTVAWWGEE IRRFHELVPI DGLWIDMNEI NATGVQAPIG FKTIATSALH YNGVREYDAH SIYGFSETVA THKGLLSIEG
501: KRPFILSRST FVGSGKYAAH WTGDNQGTWQ SLQVSISTML NFGIFGVPMV GADICGFYPQ PTEELCNRWI EVGAFYPFSR DHANYYSPRQ ELYQWATVAE
601: SARNALGMRY KILPYLYTLN YEAHMTGAPI ARPLFFSFPE YTECYGSSRQ FLLGSSLMIS PVLEQGKTEV EALFPPGSWY HMFDMTQAVV SKSGKRVTLP
701: APLNFVNVHL YQNTILPMQQ GGLISKEART TPFNLVITFP AGASEGYATG KLYLDEDELP EMKLGNGQST YVDFYASVGN GTVKMWSQVK EGKFALSKGW
801: VIEKVSVLGL RGAGQASEIE INGSPVANEG KKIEVSSKEH TYVVGLEEEG ENKSVMVEVK GLEILVGKDF NMSWKMGISG AN
001: MASSSSSLAF SLSLLLALIL CFSPTQSYKT IGKGYRLVSI EESPDGGFIG YLQVKQKNKI YGSDITTLRL FVKHETDSRL RVHITDAKQQ RWEVPYNLLP
101: REQPPQVGKV IGKSRKSPIT VQEISGSELI FSYTTDPFTF AVKRRSNHET LFNTTSSLVF KDQYLEISTS LPKEASLYGL GENSQANGIK LVPNEPYTLY
201: TEDVSAINLN TDLYGSHPMY MDLRNVGGKA YAHAVLLLNS NGMDVFYRGD SLTYKVIGGV FDFYFIAGPS PLNVVDQYTQ LIGRPAPMPY WSLGFHQCRW
301: GYHNLSVVED VVDNYKKAKI PLDVIWNDDD HMDGHKDFTL NPVAYPRAKL LAFLDKIHKI GMKYIVINDP GIGVNASYGT FQRAMAADVF IKYEGKPFLA
401: QVWPGPVYFP DFLNPKTVSW WGDEIKRFHD LVPIDGLWID MNEVSNFCSG LCTIPEGKQC PSGEGPGWVC CLDCKNITKT RWDDPPYKIN ATGVVAPVGF
501: KTIATSATHY NGVREYDAHS IYGFSETIAT HKGLLNVQGK RPFILSRSTF VGSGQYAAHW TGDNQGTWQS LQVSISTMLN FGIFGVPMVG SDICGFYPQP
601: TEELCNRWIE VGAFYPFSRD HANYYSPRQE LYQWDTVADS ARNALGMRYK ILPFLYTLNY EAHMTGAPIA RPLFFSFPEY TECYGNSRQF LLGSSFMISP
701: VLEQGKTEVE ALFPPGSWYH MFDMTQAVVS KNGKRVTLPA PLNFVNVHLY QNTILPTQQG GLISKDARTT PFSLVIAFPA GASEGYATGK LYLDEDELPE
801: MKLGNGQSTY VDFYASVGNG TMKMWSQVKE GKFALSKGWV IEKVSVLGLR GAGQVSEIQI NGSPMTKKIE VSSKEHTYVI GLEDEEENKS VMVEVRGLEM
901: LVGKDFNMSW KMGIN
101: REQPPQVGKV IGKSRKSPIT VQEISGSELI FSYTTDPFTF AVKRRSNHET LFNTTSSLVF KDQYLEISTS LPKEASLYGL GENSQANGIK LVPNEPYTLY
201: TEDVSAINLN TDLYGSHPMY MDLRNVGGKA YAHAVLLLNS NGMDVFYRGD SLTYKVIGGV FDFYFIAGPS PLNVVDQYTQ LIGRPAPMPY WSLGFHQCRW
301: GYHNLSVVED VVDNYKKAKI PLDVIWNDDD HMDGHKDFTL NPVAYPRAKL LAFLDKIHKI GMKYIVINDP GIGVNASYGT FQRAMAADVF IKYEGKPFLA
401: QVWPGPVYFP DFLNPKTVSW WGDEIKRFHD LVPIDGLWID MNEVSNFCSG LCTIPEGKQC PSGEGPGWVC CLDCKNITKT RWDDPPYKIN ATGVVAPVGF
501: KTIATSATHY NGVREYDAHS IYGFSETIAT HKGLLNVQGK RPFILSRSTF VGSGQYAAHW TGDNQGTWQS LQVSISTMLN FGIFGVPMVG SDICGFYPQP
601: TEELCNRWIE VGAFYPFSRD HANYYSPRQE LYQWDTVADS ARNALGMRYK ILPFLYTLNY EAHMTGAPIA RPLFFSFPEY TECYGNSRQF LLGSSFMISP
701: VLEQGKTEVE ALFPPGSWYH MFDMTQAVVS KNGKRVTLPA PLNFVNVHLY QNTILPTQQG GLISKDARTT PFSLVIAFPA GASEGYATGK LYLDEDELPE
801: MKLGNGQSTY VDFYASVGNG TMKMWSQVKE GKFALSKGWV IEKVSVLGLR GAGQVSEIQI NGSPMTKKIE VSSKEHTYVI GLEDEEENKS VMVEVRGLEM
901: LVGKDFNMSW KMGIN
Arabidopsis Description
XYL1Alpha-xylosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y7]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.