Factsheet for Solyc05g009470.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

plastid: 20363867
extracellular: 22364583
extracellular: 22892874
plastid: 22908117
extracellular: 26583031
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

msms PMID: 26583031 doi

F Gawehns, L Ma, O Bruning, PM Houterman, S Boeren, BJ Cornelissen, M Rep, FL Takken

Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037696	Potato	extracellular	97.52	97.52
Solyc04g007150.2.1	Tomato	extracellular	51.94	80.47
VIT_01s0011g03450.t01	Wine grape	extracellular	74.14	74.46
KRH75375	Soybean	endoplasmic reticulum	73.6	73.6
KRH45278	Soybean	endoplasmic reticulum	72.52	72.68
Bra004319.1-P	Field mustard	extracellular, vacuole	71.77	71.92
KRH35960	Soybean	endoplasmic reticulum	71.66	71.89
CDX96008	Canola	extracellular, vacuole	67.24	71.81
AT1G68560.1	Thale cress	extracellular, vacuole	70.8	71.8
CDY38593	Canola	extracellular, vacuole	67.13	71.77
Bra004031.1-P	Field mustard	extracellular, vacuole	71.44	71.75
Bra035407.1-P	Field mustard	extracellular, vacuole	71.66	71.74
CDY44885	Canola	extracellular, vacuole	68.0	71.54
CDX81531	Canola	extracellular, vacuole	68.0	71.54
CDY04236	Canola	extracellular, vacuole	66.59	71.28
CDY07378	Canola	extracellular, vacuole	67.35	71.1
Solyc04g007160.1.1	Tomato	extracellular	20.47	70.63
AT3G45940.1	Thale cress	vacuole	62.5	66.82
GSMUA_Achr1P20950_001	Banana	golgi, vacuole	56.57	66.37
EES02554	Sorghum	extracellular, vacuole	63.25	63.25
Zm00001d039994_P001	Maize	extracellular	62.93	63.0
Os01t0130400-01	Rice	extracellular	62.5	62.23
TraesCS3D01G038300.1	Wheat	golgi	61.96	60.65
TraesCS3B01G041700.1	Wheat	unclear	61.75	60.63
TraesCS3A01G042100.1	Wheat	nucleus	61.96	60.59
HORVU3Hr1G003540.2	Barley	extracellular, vacuole	61.21	59.54
HORVU2Hr1G062940.1	Barley	extracellular, plastid, vacuole	6.25	54.72
Solyc04g009630.2.1	Tomato	extracellular	35.99	51.46
Solyc02g069670.2.1	Tomato	extracellular	40.52	44.71
Solyc04g049070.2.1	Tomato	plastid	24.46	24.65
Solyc08g075530.2.1	Tomato	plastid	21.88	18.99
Solyc03g094020.2.1	Tomato	extracellular	14.33	15.67

Protein Annotations

Gene3D:2.60.40.1180	Gene3D:2.60.40.1760	MapMan:21.2.1.2.5	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016798	GO:GO:0030246	InterPro:Gal_mutarotase_N	InterPro:Gal_mutarotase_sf_dom	InterPro:Glyco_hydro_31	InterPro:Glyco_hydro_31_AS
InterPro:Glyco_hydro_31_N_dom	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	UniProt:K4BXC1	PFAM:PF01055
PFAM:PF13802	PFAM:PF16863	ScanProsite:PS00129	PANTHER:PTHR22762	PANTHER:PTHR22762:SF125	SUPFAM:SSF51011
SUPFAM:SSF51445	SUPFAM:SSF74650	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc05g009470.2	EnsemblPlants:Solyc05g009470.2.1	TMHMM:TMhelix
UniParc:UPI0002766A6F	:	:	:	:	:

Description

No Description!

Coordinates

chr5:-:3636010..3643963

Molecular Weight (calculated)

104632.0 Da

IEP (calculated)

7.294

GRAVY (calculated)

-0.284

Length

928 amino acids

Sequence
(BLAST)

001: MKFSFSFPFL LVLTICIIGC VKLVHTAPTK IGNGYSLIAI EESPDGGLIG YLKVKKKNKI YGPDIPNLQL YVKHETDNRL RIHITDADKQ RWEVPYNLLP
101: RESPPSLKQT IGKSRKGQLP LLSNQKYSGN ELMFSYTSDP FSFSVKRKSN GQTIFNSSSE DSDPYSNLVF KDQYLEISTK LPKDASLYGL GENTQPHGIK
201: IYPNDPYTLY TTDQSSINLN MDLYGSHPMY MDLRNVNGEA YAHAVLLMNS NGMDVFYRGD SLTYKVIGGV LDFYFFSGPT PLAVVDQYTE FIGRPAPMPY
301: WSFGFHQCRW GYHNLSVIED VIANYKKAKI PLDVIWNDDD HMDGKKDFTL HPVNYPGPKL RAFLKKIHAE GMHYIVINDP GIGVNKSYGT YQRGLANDVF
401: IKYQGKPFLA QVWPGAVHFP DFLNPKTVEW WGDEIRRFHE LAPIDGLWID MNEVSNFCNG LCTIPEGRIC PNGTGPGWIC CLDCKNVTKT KWDDPPYKIN
501: ASGIQAPIGY KTIATSATHY NGVREYDAHS LYGFSETIAT HKGLQAIEGK RPFILTRATF VGSGHYAAHW TGDNKGTWED LKYSISTVLN FGMFGVPMVG
601: SDICGFYPAA PPLEELCNRW IQVGAFYPFS RDHANYYSPR QELYQWKSVT KSSRNALGMR YKLLPYLYTL SYEAHITGAP IVRPLFFTFP NIPELYELST
701: QFLVGSNVMV SPVLEKAKTK VNALFPPGTW YSLFDMTQVI VTKEPHYRSL DAPLHVVNVH LYQNTILPMQ RGGMLTKEAR MTPFTIVVAF PLGASEGVAK
801: GNLFLDDDEL PEMKLGNGKS TYMDFHATTS NGTVKIWSEV QESKYALDKG WYIEKVTVLG LNGIGGAFDI LVDGSKVEDT SKLEFETEEH KFVDKLEDGG
901: HKKSMMLDIK GLELPIGKNF AMSWKMGI

Best Arabidopsis Sequence Match ( AT1G68560.1 )
(BLAST)

001: MASSSSSLAF SLSLLLALIL CFSPTQSYKT IGKGYRLVSI EESPDGGFIG YLQVKQKNKI YGSDITTLRL FVKHETDSRL RVHITDAKQQ RWEVPYNLLP
101: REQPPQVGKV IGKSRKSPIT VQEISGSELI FSYTTDPFTF AVKRRSNHET LFNTTSSLVF KDQYLEISTS LPKEASLYGL GENSQANGIK LVPNEPYTLY
201: TEDVSAINLN TDLYGSHPMY MDLRNVGGKA YAHAVLLLNS NGMDVFYRGD SLTYKVIGGV FDFYFIAGPS PLNVVDQYTQ LIGRPAPMPY WSLGFHQCRW
301: GYHNLSVVED VVDNYKKAKI PLDVIWNDDD HMDGHKDFTL NPVAYPRAKL LAFLDKIHKI GMKYIVINDP GIGVNASYGT FQRAMAADVF IKYEGKPFLA
401: QVWPGPVYFP DFLNPKTVSW WGDEIKRFHD LVPIDGLWID MNEVSNFCSG LCTIPEGKQC PSGEGPGWVC CLDCKNITKT RWDDPPYKIN ATGVVAPVGF
501: KTIATSATHY NGVREYDAHS IYGFSETIAT HKGLLNVQGK RPFILSRSTF VGSGQYAAHW TGDNQGTWQS LQVSISTMLN FGIFGVPMVG SDICGFYPQP
601: TEELCNRWIE VGAFYPFSRD HANYYSPRQE LYQWDTVADS ARNALGMRYK ILPFLYTLNY EAHMTGAPIA RPLFFSFPEY TECYGNSRQF LLGSSFMISP
701: VLEQGKTEVE ALFPPGSWYH MFDMTQAVVS KNGKRVTLPA PLNFVNVHLY QNTILPTQQG GLISKDARTT PFSLVIAFPA GASEGYATGK LYLDEDELPE
801: MKLGNGQSTY VDFYASVGNG TMKMWSQVKE GKFALSKGWV IEKVSVLGLR GAGQVSEIQI NGSPMTKKIE VSSKEHTYVI GLEDEEENKS VMVEVRGLEM
901: LVGKDFNMSW KMGIN

Arabidopsis Description

XYL1Alpha-xylosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y7]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.