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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 7
  • endoplasmic reticulum 5
  • vacuole 7
  • plasma membrane 5
  • golgi 6
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:plastid, secretory
BaCelLo:secretory
ChloroP:plastid
EpiLoc:golgi
iPSORT:secretory
MultiLoc:vacuole
Plant-mPloc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:extracellular
 nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH45278 Soybean endoplasmic reticulum 95.91 96.11
KRH35960 Soybean endoplasmic reticulum 81.57 81.84
VIT_01s0011g03450.t01 Wine grape extracellular 77.26 77.6
Solyc04g007150.2.1 Tomato extracellular 49.46 76.63
AT1G68560.1 Thale cress extracellular, vacuole 74.57 75.63
Bra004319.1-P Field mustard extracellular, vacuole 75.32 75.49
CDY38593 Canola extracellular, vacuole 70.37 75.23
CDX96008 Canola extracellular, vacuole 70.15 74.91
Bra004031.1-P Field mustard extracellular, vacuole 74.57 74.89
Bra035407.1-P Field mustard extracellular, vacuole 74.68 74.76
PGSC0003DMT400041054 Potato endoplasmic reticulum, extracellular, vacuole 74.89 74.73
CDX81531 Canola extracellular, vacuole 70.8 74.49
CDY44885 Canola extracellular, vacuole 70.8 74.49
CDY07378 Canola extracellular, vacuole 69.94 73.83
CDY04236 Canola extracellular, vacuole 68.97 73.82
PGSC0003DMT400037696 Potato extracellular 73.71 73.71
Solyc05g009470.2.1 Tomato extracellular 73.6 73.6
GSMUA_Achr1P20950_001 Banana golgi, vacuole 60.13 70.54
AT3G45940.1 Thale cress vacuole 64.98 69.47
Zm00001d039994_P001 Maize extracellular 67.35 67.42
EES02554 Sorghum extracellular, vacuole 67.35 67.35
Os01t0130400-01 Rice extracellular 67.24 66.95
TraesCS3D01G038300.1 Wheat golgi 65.09 63.71
TraesCS3A01G042100.1 Wheat nucleus 64.87 63.44
TraesCS3B01G041700.1 Wheat unclear 64.44 63.28
HORVU3Hr1G003540.2 Barley extracellular, vacuole 64.55 62.79
Solyc04g007160.1.1 Tomato extracellular 17.89 61.71
HORVU2Hr1G062940.1 Barley extracellular, plastid, vacuole 7.0 61.32
KRH11838 Soybean vacuole 33.94 48.99
KRH11840 Soybean cytosol, nucleus 23.92 47.03
KRH36850 Soybean nucleus 44.29 45.82
KRH11839 Soybean extracellular 44.07 43.65
KRH53951 Soybean cytosol, nucleus, vacuole 21.66 24.36
KRH63987 Soybean endoplasmic reticulum 23.92 24.29
KRH62685 Soybean nucleus 23.17 20.42
KRH66765 Soybean plastid 14.66 15.49
Protein Annotations
EntrezGene:100808526Gene3D:2.60.40.1180Gene3D:2.60.40.1760MapMan:21.2.1.2.5Gene3D:3.20.20.80EMBL:ACUP02000340
EnsemblPlantsGene:GLYMA_01G081300GO:GO:0003674GO:GO:0003824GO:GO:0004553GO:GO:0005488GO:GO:0005975
GO:GO:0008150GO:GO:0008152GO:GO:0016787GO:GO:0016798GO:GO:0030246InterPro:Gal_mutarotase_N
InterPro:Gal_mutarotase_sf_domInterPro:Glyco_hydro_31InterPro:Glyco_hydro_31_ASInterPro:Glyco_hydro_31_N_domInterPro:Glyco_hydro_bInterPro:Glycoside_hydrolase_SF
UniProt:I1J6K4InterPro:IPR013780EnsemblPlants:KRH75375ProteinID:KRH75375ProteinID:KRH75375.1PFAM:PF01055
PFAM:PF13802PFAM:PF16863ScanProsite:PS00129PANTHER:PTHR22762PANTHER:PTHR22762:SF125SUPFAM:SSF51011
SUPFAM:SSF51445SUPFAM:SSF74650SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI00023370B3SEG:seg
Description
hypothetical protein
Coordinates
chr1:-:23397460..23402672
Molecular Weight (calculated)
102947.0 Da
IEP (calculated)
6.689
GRAVY (calculated)
-0.202
Length
928 amino acids
Sequence
(BLAST)
001: MVSSNRFAAL PLCSLLLALL LCAVGASSSS SSSTNATKIG QGYRLVSIEE TPDGGLIGIL QVKQKTKTYG PDIPLLRFYV KHETDNRLRV HITDAQKQRW
101: EVPYNLLPRE QPPPLSQSIG KSRKNPITVS QYSGSEFLFS YTSDPFSFAV KRKSNGETLF DSSSGDSDPF SSLVFKDQYL EISTKLPKDA SLYGLGENTQ
201: PHGIKLYPSD PYTLYTTDIS AINLNADLYG SHPVYMDLRN AGGKASAHAV LLLNSNGMDV FYTGTSLTYK IIGGVFDFYF FSGPSPLNVV DQYTTLIGRP
301: APMPYWAFGF HQCRWGYHNL SVVEDVVENY KKAQIPLDVI WNDDDHMDGK KDFTLNPVNY PRPKLLNFLD KIHNIGMKYI VIIDPGIAVN TSYGVYQRGV
401: ANDVFIKYDG EPFLAQVWPG AVNFPDFLNP KTVSWWVDEI HRFHELVPVD GLWIDMNEVS NFCSGKCKIP KGKCPTGTGP GWICCLDCKN ITKTRWDDPP
501: YKINASGIKA PIGFKTIATS AYHYNGVLEY DAHSLYGFSQ TIATHKGLQG LQGKRPFILS RSTYVGSGKY AAHWTGDNQG TWENLRYSIS TMLNFGIFGV
601: PMVGSDICGF YPQPTEELCN RWIEVGAFYP FSRDHANYYS PRQELYQWQS VAESARNALG IRYKLLPFLY TLNYEAHVSG APIARPLFFS FPTYTECYGL
701: STQFLLGSSL MVSPVLEQGK TQVKALFPPG SWYSLLDWTH TITSKDGVYI TLDAPLHVVN VHLYQNTILP MQQGGMVSKE ARATPFTLIV TFPSDATQGE
801: AKGNLFLDND ELPDMNLGNG YSTYVDLHAT VDQGAVKVWS EVQEGKFALD KGWIIDSISV LGLEGSGAVS SLEIDGKPLM GGSNVNVTTS AHEHLNSEGE
901: GEKKTVMVAL RGLSIPVGKN FAMTWKMG
Best Arabidopsis Sequence Match ( AT1G68560.1 )
(BLAST)
001: MASSSSSLAF SLSLLLALIL CFSPTQSYKT IGKGYRLVSI EESPDGGFIG YLQVKQKNKI YGSDITTLRL FVKHETDSRL RVHITDAKQQ RWEVPYNLLP
101: REQPPQVGKV IGKSRKSPIT VQEISGSELI FSYTTDPFTF AVKRRSNHET LFNTTSSLVF KDQYLEISTS LPKEASLYGL GENSQANGIK LVPNEPYTLY
201: TEDVSAINLN TDLYGSHPMY MDLRNVGGKA YAHAVLLLNS NGMDVFYRGD SLTYKVIGGV FDFYFIAGPS PLNVVDQYTQ LIGRPAPMPY WSLGFHQCRW
301: GYHNLSVVED VVDNYKKAKI PLDVIWNDDD HMDGHKDFTL NPVAYPRAKL LAFLDKIHKI GMKYIVINDP GIGVNASYGT FQRAMAADVF IKYEGKPFLA
401: QVWPGPVYFP DFLNPKTVSW WGDEIKRFHD LVPIDGLWID MNEVSNFCSG LCTIPEGKQC PSGEGPGWVC CLDCKNITKT RWDDPPYKIN ATGVVAPVGF
501: KTIATSATHY NGVREYDAHS IYGFSETIAT HKGLLNVQGK RPFILSRSTF VGSGQYAAHW TGDNQGTWQS LQVSISTMLN FGIFGVPMVG SDICGFYPQP
601: TEELCNRWIE VGAFYPFSRD HANYYSPRQE LYQWDTVADS ARNALGMRYK ILPFLYTLNY EAHMTGAPIA RPLFFSFPEY TECYGNSRQF LLGSSFMISP
701: VLEQGKTEVE ALFPPGSWYH MFDMTQAVVS KNGKRVTLPA PLNFVNVHLY QNTILPTQQG GLISKDARTT PFSLVIAFPA GASEGYATGK LYLDEDELPE
801: MKLGNGQSTY VDFYASVGNG TMKMWSQVKE GKFALSKGWV IEKVSVLGLR GAGQVSEIQI NGSPMTKKIE VSSKEHTYVI GLEDEEENKS VMVEVRGLEM
901: LVGKDFNMSW KMGIN
Arabidopsis Description
XYL1Alpha-xylosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y7]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.