CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	extracellular

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11838	Soybean	vacuole	63.55	88.65
KRH11839	Soybean	extracellular	87.51	83.78
KRH11840	Soybean	cytosol, nucleus	40.91	77.75
Solyc04g009630.2.1	Tomato	extracellular	50.17	69.34
VIT_10s0092g00250.t01	Wine grape	cytosol, extracellular, plastid	52.17	66.86
VIT_10s0092g00240.t01	Wine grape	golgi, vacuole	67.22	66.56
PGSC0003DMT400041356	Potato	extracellular, vacuole	63.66	63.73
AT5G11720.1	Thale cress	vacuole	62.32	61.97
CDX70414	Canola	extracellular, plastid, vacuole	60.98	60.91
CDX78437	Canola	extracellular, vacuole	60.54	60.87
Bra006111.1-P	Field mustard	extracellular, vacuole	60.42	60.83
OQU76881	Sorghum	extracellular, vacuole	54.07	57.81
Zm00001d036608_P003	Maize	extracellular	55.74	56.82
Os06t0675700-01	Rice	nucleus	55.18	55.93
Os06t0676700-01	Rice	plastid	54.63	55.3
TraesCS7A01G464200.2	Wheat	endoplasmic reticulum	54.52	55.19
TraesCS2A01G549800.1	Wheat	extracellular, vacuole	36.23	55.18
HORVU2Hr1G120870.1	Barley	mitochondrion	41.03	53.57
TraesCS7D01G451800.2	Wheat	unclear	54.96	52.84
TraesCS7B01G364700.1	Wheat	mitochondrion, plastid, vacuole	54.07	52.26
TraesCS2A01G548900.1	Wheat	unclear	50.17	51.96
HORVU7Hr1G106540.2	Barley	cytosol	53.96	51.93
TraesCS2B01G580100.1	Wheat	endoplasmic reticulum	49.94	51.73
TraesCS2D01G550600.1	Wheat	endoplasmic reticulum	49.83	51.62
TraesCS2B01G580200.1	Wheat	endoplasmic reticulum	49.83	51.62
TraesCS2D01G550700.1	Wheat	cytosol, extracellular, vacuole	51.17	51.57
TraesCS2D01G550400.1	Wheat	endoplasmic reticulum	49.72	51.5
TraesCS2D01G550500.1	Wheat	golgi	49.39	51.33
TraesCS2B01G580300.1	Wheat	extracellular, plastid, vacuole	50.84	51.24
TraesCS2A01G548700.1	Wheat	mitochondrion	44.59	51.09
HORVU2Hr1G120920.3	Barley	endoplasmic reticulum, extracellular, vacuole	49.61	50.86
TraesCS2A01G549500.1	Wheat	golgi	48.72	50.64
TraesCS2A01G548600.1	Wheat	endoplasmic reticulum, extracellular, vacuole	48.61	50.52
TraesCS2A01G548500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	48.61	50.52
TraesCS2A01G549600.1	Wheat	extracellular, vacuole	43.26	50.06
HORVU2Hr1G120880.1	Barley	mitochondrion	50.95	49.51
VIT_10s0092g00260.t01	Wine grape	extracellular, golgi	13.49	49.39
KRH35960	Soybean	endoplasmic reticulum	46.27	44.86
TraesCS2A01G549700.1	Wheat	cytosol, extracellular, vacuole	12.6	44.84
KRH75375	Soybean	endoplasmic reticulum	45.82	44.29
KRH45278	Soybean	endoplasmic reticulum	45.48	44.06
GSMUA_Achr3P23330_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	7.25	40.62
KRH63987	Soybean	endoplasmic reticulum	25.98	25.49
KRH53951	Soybean	cytosol, nucleus, vacuole	23.3	25.33
KRH62685	Soybean	nucleus	25.31	21.56
KRH66765	Soybean	plastid	16.16	16.51

Protein Annotations

EntrezGene:100802518	Gene3D:2.60.40.1180	Gene3D:2.60.40.1760	Gene3D:3.20.20.80	MapMan:50.3.2	UniProt:A0A0R0I6Y6
EMBL:ACUP02005398	EnsemblPlantsGene:GLYMA_09G028000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005488
GO:GO:0005575	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0016798	GO:GO:0030246	InterPro:Gal_mutarotase_N	InterPro:Gal_mutarotase_sf_dom	InterPro:Glyco_hydro_31
InterPro:Glyco_hydro_31_AS	InterPro:Glyco_hydro_31_CS	InterPro:Glyco_hydro_31_N_dom	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780
EnsemblPlants:KRH36850	ProteinID:KRH36850	ProteinID:KRH36850.1	PFAM:PF01055	PFAM:PF13802	PFAM:PF16863
ScanProsite:PS00129	ScanProsite:PS00707	PANTHER:PTHR22762	PANTHER:PTHR22762:SF121	SUPFAM:SSF51011	SUPFAM:SSF51445
SUPFAM:SSF74650	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002338022	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:-:2298756..2305697

Molecular Weight (calculated)

99864.1 Da

IEP (calculated)

6.398

GRAVY (calculated)

-0.172

Length

897 amino acids

Sequence
(BLAST)

001: MDTTTTIAPL LFCTCACLIF FSASLSEATV VGYGYTISTV NNYPIKNSLT ANLNLIKSSS VSGPDIPHLS LTASFENKDR LRVRITDSNH QRWEIPQEVI
101: PRDSSSQHYP LGFLNTKQGS HQPKDSLSLT HSDSDLVFSL HNTTPFGFTV SRKSSNDVLF HAAPDPSNPE TFLVFKDQYL QLSSSLPSQR ASLYGFGEHT
201: KSSFKLRPNQ TLTLWNADIA SANLDLNLYG SHPFYLDVRS HSSDGKVKAG TTHGVLLLNS NGMDIVYGGD RITYKVIGGV FDLYFFAGSS PELVLEQYTQ
301: LIGRPAPMPY WSFGFHQCRW GYKNVSDLED VVANYAKAGI PLEVMWTDID YMDAFKDFTL DPINFPLDKM RSFVDTLHKN GQKYVLILDP GISVNETYAT
401: YDRGLKADVY IKRNGNNYLG QVWPGPVYYP DFLNPRSQAF WGGEIKLFRD LLPIDGIWLD MNELSNFITS PPIPSSNLDN PPYKVNNVGD QRPINDKTVP
501: ATSLHFGNIT EYNVHNLYGL LESKVTNKAL KDITGKRPFI LSRSTFVSSG KYAAHWTGDN AATWNDLAYS IPAILNSGIF GIPMVGADIC GFEGNTTEEL
601: CGRWIQLGAF YPFARDHSVI NSIRQELYVW DSVASSARKV LGLRYRLLPY FYTLMYEAHT KGTPIARPLF FSFPEDVTTY EINSQFLLGR GVLVSPVLQS
701: GATTVDAYFP KGTWFDLFNV SNSVNAESGK YVTLDAPYDH INVHVGEGNI LALQGEAMTT DAARKTAFQL VVVISSSRSS YGQLYLDDGE ALDMAGAKDQ
801: WTLVSFYGAL HNNSVSVTSK VTNGRFALDQ RWILDKVTFL RIPKLAGNEL SIVNGTSSMK KAIVKSQFDS SSQFVNVQVS KLSLLIGEEF QLEIEIK

Best Arabidopsis Sequence Match ( AT5G11720.1 )
(BLAST)

001: MSSLHWFPNI FIVVVVFFSL RSSQVVLEEE ESTVVGYGYV VRSVGVDSNR QVLTAKLDLI KPSSVYAPDI KSLNLHVSLE TSERLRIRIT DSSQQRWEIP
101: ETVIPRAGNH SPRRFSTEED GGNSPENNFL ADPSSDLVFT LHNTTPFGFS VSRRSSGDIL FDTSPDSSDS NTYFIFKDQF LQLSSALPEN RSNLYGIGEH
201: TKRSFRLIPG ETMTLWNADI GSENPDVNLY GSHPFYMDVR GSKGNEEAGT THGVLLLNSN GMDVKYEGHR ITYNVIGGVI DLYVFAGPSP EMVMNQYTEL
301: IGRPAPMPYW SFGFHQCRYG YKNVSDLEYV VDGYAKAGIP LEVMWTDIDY MDGYKDFTLD PVNFPEDKMQ SFVDTLHKNG QKYVLILDPG IGVDSSYGTY
401: NRGMEADVFI KRNGEPYLGE VWPGKVYFPD FLNPAAATFW SNEIKMFQEI LPLDGLWIDM NELSNFITSP LSSGSSLDDP PYKINNSGDK RPINNKTVPA
501: TSIHFGNISE YDAHNLYGLL EAKATHQAVV DITGKRPFIL SRSTFVSSGK YTAHWTGDNA AKWEDLAYSI PGILNFGLFG IPMVGADICG FSHDTTEELC
601: RRWIQLGAFY PFARDHSSLG TARQELYLWD SVASSARKVL GLRMRLLPHL YTLMYEAHVS GNPIARPLFF SFPQDTKTYE IDSQFLIGKS IMVSPALKQG
701: AVAVDAYFPA GNWFDLFNYS FAVGGDSGKH VRLDTPADHV NVHVREGSIV AMQGEALTTR DARKTPYQLL VVASRLENIS GELFLDDGEN LRMGAGGGNR
801: DWTLVKFRCY VTGKSVVLRS EVVNPEYASK MKWSIGKVTF VGFENVENVK TYEVRTSERL RSPRISLIKT VSDNDDPRFL SVEVSKLSLL VGKKFEMRLR
901: LT

Arabidopsis Description

AT5g11720/T22P22_110 [Source:UniProtKB/TrEMBL;Acc:Q9LYF8]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.