Factsheet for TraesCS2D01G550500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	extracellular

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G548500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	96.29	96.29
TraesCS2A01G548600.1	Wheat	endoplasmic reticulum, extracellular, vacuole	96.18	96.18
TraesCS2A01G549500.1	Wheat	golgi	95.83	95.83
HORVU2Hr1G120870.1	Barley	mitochondrion	71.49	89.81
TraesCS2D01G550400.1	Wheat	endoplasmic reticulum	79.37	79.1
TraesCS2D01G550600.1	Wheat	endoplasmic reticulum	77.64	77.37
TraesCS2D01G550700.1	Wheat	cytosol, extracellular, vacuole	78.33	75.96
OQU76881	Sorghum	extracellular, vacuole	65.35	67.22
Os06t0675700-01	Rice	nucleus	68.02	66.33
Os06t0676700-01	Rice	plastid	67.67	65.91
Zm00001d036608_P003	Maize	extracellular	66.86	65.57
TraesCS7D01G451800.2	Wheat	unclear	67.9	62.81
GSMUA_Achr3P23340_001	Banana	cytoskeleton, cytosol, peroxisome	44.15	58.17
GSMUA_Achr11P...	Banana	extracellular, vacuole	45.77	56.19
Solyc04g009630.2.1	Tomato	extracellular	41.6	55.32
KRH11838	Soybean	vacuole	38.82	52.1
VIT_10s0092g00250.t01	Wine grape	cytosol, extracellular, plastid	42.18	52.0
VIT_10s0092g00240.t01	Wine grape	golgi, vacuole	54.0	51.43
PGSC0003DMT400041356	Potato	extracellular, vacuole	53.19	51.23
AT5G11720.1	Thale cress	vacuole	53.3	51.0
Bra006111.1-P	Field mustard	extracellular, vacuole	52.49	50.84
CDX78437	Canola	extracellular, vacuole	52.38	50.67
CDX70414	Canola	extracellular, plastid, vacuole	52.38	50.33
Solyc02g069670.2.1	Tomato	extracellular	48.32	49.58
KRH36850	Soybean	nucleus	51.33	49.39
KRH11839	Soybean	extracellular	51.45	47.39
KRH11840	Soybean	cytosol, nucleus	25.72	47.03
TraesCS3D01G038300.1	Wheat	golgi	46.35	42.19
VIT_10s0092g00260.t01	Wine grape	extracellular, golgi	11.47	40.41
TraesCS4D01G244900.1	Wheat	cytosol	25.49	26.67
TraesCS1D01G239100.1	Wheat	golgi, plastid	24.91	20.61
TraesCS7D01G133900.2	Wheat	cytosol, nucleus, peroxisome, plastid	25.14	20.59
TraesCS3D01G188900.1	Wheat	plastid	16.92	16.15

Protein Annotations

Gene3D:2.60.40.1180	Gene3D:2.60.40.1760	Gene3D:3.20.20.80	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0030246	InterPro:Gal_mutarotase_N	InterPro:Gal_mutarotase_sf_dom	InterPro:Glyco_hydro_31	InterPro:Glyco_hydro_31_CS	InterPro:Glyco_hydro_31_N_dom
InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	PFAM:PF01055	PFAM:PF13802	PFAM:PF16863
ScanProsite:PS00707	PANTHER:PTHR22762	PANTHER:PTHR22762:SF126	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF74650
SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS2D01G550500	EnsemblPlants:TraesCS2D01G550500.1	TIGR:cd06602	TIGR:cd14752	SEG:seg

Description

No Description!

Coordinates

chr2D:+:626385063..626388089

Molecular Weight (calculated)

95834.9 Da

IEP (calculated)

7.298

GRAVY (calculated)

-0.192

Length

863 amino acids

Sequence
(BLAST)

001: MAIGLPSTDH FVLLTILICL LVHHCSAVYD VESTAESGKL MSAQLKLVGG SADFGPDVKS LTLTASLETD SRLRVRITDA DHRRWEVPQD VIPRPAPGPQ
101: PKDVLLDSPG NPSMPSNSTM SSASSDLTFT IHASPFRFTV SRRSTGDTLF DTSANLVFKD RYLEVTSTLP ADRASLYGLG EQKKETFRLQ HNDTFTLWNG
201: DVTWSDQPDL NLYGSHPFYM DVRSGGAAHG VLLLNSNGMD ILYGGSYVTY KVIGGVLDFY FFAGPSPLDV VDQYTQLIGR PAPMPYWSFG FHQSRYGYKN
301: VADLDGVVAG YAKARIPMEA IWSDIDYMDG YQDFTLDPVN YPSKQLRPFV DRLHNNGQKY VVTVHPAIKR QAAAHEDLFL KRNGANLVGE AWPGEVYFLD
401: FMSPRSTEYW ARKISEFRRT IPVDGLWCDI NEPSNFKQWQ PLNPLDDPPY RINNSGFHLP INYRTVPVST LHYNGVSEYD AHNLFGLLQA KATHAGLLRD
501: TARRPFVLSR STFVGSGRYA AHWTGNNVAR WDELAHSINT ILNFGLFGIP MMGADICGFN GNTTQELCSR WIQLGAFYPF ARAHAEKTTL RRELYVWEAT
601: ARSARKALGM RYRLLPYMYT LMYEAHTTGA PIARPLFFSY PQDADTYGVD RQFLLGRGVL VSPVLEPGAT TVDAYFPAGR WFSLYDYSLA YTMKVGKRVT
701: LPAPADLANA HLAGGNILLL QHAELTTSAA RQSEFHLLVA LAENGTASGE LFLDDGEPPE MGAVGGNWTL VRFSCDREES KGMVTTKVSS HVVQNSYAPS
801: RAQVIGKVVF MGLQSAPKSF TIYVNNVELK AARTKSRTSG VFSVSGLSLA IGQKFEIKLV MSH

Best Arabidopsis Sequence Match ( AT1G68560.1 )
(BLAST)

001: MASSSSSLAF SLSLLLALIL CFSPTQSYKT IGKGYRLVSI EESPDGGFIG YLQVKQKNKI YGSDITTLRL FVKHETDSRL RVHITDAKQQ RWEVPYNLLP
101: REQPPQVGKV IGKSRKSPIT VQEISGSELI FSYTTDPFTF AVKRRSNHET LFNTTSSLVF KDQYLEISTS LPKEASLYGL GENSQANGIK LVPNEPYTLY
201: TEDVSAINLN TDLYGSHPMY MDLRNVGGKA YAHAVLLLNS NGMDVFYRGD SLTYKVIGGV FDFYFIAGPS PLNVVDQYTQ LIGRPAPMPY WSLGFHQCRW
301: GYHNLSVVED VVDNYKKAKI PLDVIWNDDD HMDGHKDFTL NPVAYPRAKL LAFLDKIHKI GMKYIVINDP GIGVNASYGT FQRAMAADVF IKYEGKPFLA
401: QVWPGPVYFP DFLNPKTVSW WGDEIKRFHD LVPIDGLWID MNEVSNFCSG LCTIPEGKQC PSGEGPGWVC CLDCKNITKT RWDDPPYKIN ATGVVAPVGF
501: KTIATSATHY NGVREYDAHS IYGFSETIAT HKGLLNVQGK RPFILSRSTF VGSGQYAAHW TGDNQGTWQS LQVSISTMLN FGIFGVPMVG SDICGFYPQP
601: TEELCNRWIE VGAFYPFSRD HANYYSPRQE LYQWDTVADS ARNALGMRYK ILPFLYTLNY EAHMTGAPIA RPLFFSFPEY TECYGNSRQF LLGSSFMISP
701: VLEQGKTEVE ALFPPGSWYH MFDMTQAVVS KNGKRVTLPA PLNFVNVHLY QNTILPTQQG GLISKDARTT PFSLVIAFPA GASEGYATGK LYLDEDELPE
801: MKLGNGQSTY VDFYASVGNG TMKMWSQVKE GKFALSKGWV IEKVSVLGLR GAGQVSEIQI NGSPMTKKIE VSSKEHTYVI GLEDEEENKS VMVEVRGLEM
901: LVGKDFNMSW KMGIN

Arabidopsis Description

XYL1Alpha-xylosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y7]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.