Factsheet for TraesCS2D01G550400.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G548900.1	Wheat	unclear	96.65	96.65
TraesCS2B01G580100.1	Wheat	endoplasmic reticulum	94.23	94.23
TraesCS2D01G550600.1	Wheat	endoplasmic reticulum	90.42	90.42
HORVU2Hr1G120920.3	Barley	endoplasmic reticulum, extracellular, vacuole	87.76	86.86
TraesCS2D01G550500.1	Wheat	golgi	79.1	79.37
TraesCS2D01G550700.1	Wheat	cytosol, extracellular, vacuole	79.91	77.75
OQU76881	Sorghum	extracellular, vacuole	65.59	67.7
Os06t0675700-01	Rice	nucleus	68.94	67.46
Zm00001d036608_P003	Maize	extracellular	67.67	66.59
Os06t0676700-01	Rice	plastid	67.78	66.25
TraesCS7D01G451800.2	Wheat	unclear	67.55	62.7
GSMUA_Achr3P23340_001	Banana	cytoskeleton, cytosol, peroxisome	45.15	59.69
GSMUA_Achr11P...	Banana	extracellular, vacuole	46.07	56.76
Solyc04g009630.2.1	Tomato	extracellular	41.8	55.78
VIT_10s0092g00250.t01	Wine grape	cytosol, extracellular, plastid	42.96	53.14
KRH11838	Soybean	vacuole	39.03	52.57
VIT_10s0092g00240.t01	Wine grape	golgi, vacuole	54.73	52.32
Bra006111.1-P	Field mustard	extracellular, vacuole	52.77	51.29
CDX78437	Canola	extracellular, vacuole	52.77	51.23
CDX70414	Canola	extracellular, plastid, vacuole	52.77	50.89
AT5G11720.1	Thale cress	vacuole	53.0	50.89
PGSC0003DMT400041356	Potato	extracellular, vacuole	52.42	50.67
KRH36850	Soybean	nucleus	51.5	49.72
Solyc02g069670.2.1	Tomato	extracellular	47.69	49.11
KRH11840	Soybean	cytosol, nucleus	26.1	47.88
KRH11839	Soybean	extracellular	50.92	47.07
TraesCS3D01G038300.1	Wheat	golgi	46.42	42.41
VIT_10s0092g00260.t01	Wine grape	extracellular, golgi	11.55	40.82
TraesCS4D01G244900.1	Wheat	cytosol	25.64	26.91
TraesCS7D01G133900.2	Wheat	cytosol, nucleus, peroxisome, plastid	25.52	20.97
TraesCS1D01G239100.1	Wheat	golgi, plastid	25.06	20.81
TraesCS3D01G188900.1	Wheat	plastid	16.51	15.82

Protein Annotations

Gene3D:2.60.40.1180	Gene3D:2.60.40.1760	Gene3D:3.20.20.80	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0030246	InterPro:Gal_mutarotase_N	InterPro:Gal_mutarotase_sf_dom	InterPro:Glyco_hydro_31	InterPro:Glyco_hydro_31_AS	InterPro:Glyco_hydro_31_CS
InterPro:Glyco_hydro_31_N_dom	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	PFAM:PF01055	PFAM:PF13802
PFAM:PF16863	ScanProsite:PS00129	ScanProsite:PS00707	PANTHER:PTHR22762	PANTHER:PTHR22762:SF126	SUPFAM:SSF51011
SUPFAM:SSF51445	SUPFAM:SSF74650	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS2D01G550400	EnsemblPlants:TraesCS2D01G550400.1	TIGR:cd06602
TIGR:cd14752	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:626169611..626173003

Molecular Weight (calculated)

95670.7 Da

IEP (calculated)

6.512

GRAVY (calculated)

-0.151

Length

866 amino acids

Sequence
(BLAST)

001: MTIISSFADL LALLTILICL LHLCGANYEV ESVAGSRNLL SAKLTLVGGT TQFGPDVKQL NLTASLETDN QLHVRITDAD HQRWEVPQDV IPRPEPALED
101: VLLHSSGMSN ASLPGSSTMS SESSDLTFTI HTVPFRFTVS RRSTGDVLFD TSATLVFKNR YLEVTSALPA RGASLCGLGE QTKRTFRLQQ NDTFTIWNED
201: LERSDLLDIN LYSSHPFYMD VRPGGAAHGV LLLNTNGMDI KYGGSYITYK VIGGVLDFYF FAGPSPLAVV DQYTQLIGRP APMPYWSFGF HQCRYGYKSV
301: ADLEGVVAGY AKAKIPLESI WSDIDYMDGY QDFTLDPVNY PAKLLRPFVD RLHNNSQKYV VIIDPAIKKE AAPPQNESVG LFLQRNGTNY VGRVWPGEVY
401: YPDFMNPRTA EYWAQKISEF RRTIPADGLW CDMNEPSNFK AWEPLNEYDD SPYRINNTGI HRNLNNKTVP VSAVHFNGVL EYDAHNLYGL LESRATHDAL
501: LKDTARRPFV LSRATFVGSG RYTAHWTGDN AARWDELAHS INTILSFGLF GIPMMGADIC GFNGNTTQEL CSRWIQLGAF YPFARAHAEK TTVRRELYVW
601: ESTAQSARKA LGMRYRMLPY MYTLMYEAHA TGSPITRPLF FSYPQDADTY GVDRQFLLGR GVLVSPVLEP GATTVGAYFP AGRWFSLHDH SPAITLQTGK
701: RVTLPAPADS ANVHLAGGNI LPLQQPGLTT SATRQSEFHL LVALAENGTA SGELFLDDGE SPEMGGMGGN WTLVRFGCNT EDSKGIITTT VSSNVVQNSY
801: ALSRTLVIGK VIFMGLPSPP KGFTVYVNGA ELKAAGTKSR TNGVFSVSGL SLVIGQQFEI KVVMSH

Best Arabidopsis Sequence Match ( AT1G68560.1 )
(BLAST)

001: MASSSSSLAF SLSLLLALIL CFSPTQSYKT IGKGYRLVSI EESPDGGFIG YLQVKQKNKI YGSDITTLRL FVKHETDSRL RVHITDAKQQ RWEVPYNLLP
101: REQPPQVGKV IGKSRKSPIT VQEISGSELI FSYTTDPFTF AVKRRSNHET LFNTTSSLVF KDQYLEISTS LPKEASLYGL GENSQANGIK LVPNEPYTLY
201: TEDVSAINLN TDLYGSHPMY MDLRNVGGKA YAHAVLLLNS NGMDVFYRGD SLTYKVIGGV FDFYFIAGPS PLNVVDQYTQ LIGRPAPMPY WSLGFHQCRW
301: GYHNLSVVED VVDNYKKAKI PLDVIWNDDD HMDGHKDFTL NPVAYPRAKL LAFLDKIHKI GMKYIVINDP GIGVNASYGT FQRAMAADVF IKYEGKPFLA
401: QVWPGPVYFP DFLNPKTVSW WGDEIKRFHD LVPIDGLWID MNEVSNFCSG LCTIPEGKQC PSGEGPGWVC CLDCKNITKT RWDDPPYKIN ATGVVAPVGF
501: KTIATSATHY NGVREYDAHS IYGFSETIAT HKGLLNVQGK RPFILSRSTF VGSGQYAAHW TGDNQGTWQS LQVSISTMLN FGIFGVPMVG SDICGFYPQP
601: TEELCNRWIE VGAFYPFSRD HANYYSPRQE LYQWDTVADS ARNALGMRYK ILPFLYTLNY EAHMTGAPIA RPLFFSFPEY TECYGNSRQF LLGSSFMISP
701: VLEQGKTEVE ALFPPGSWYH MFDMTQAVVS KNGKRVTLPA PLNFVNVHLY QNTILPTQQG GLISKDARTT PFSLVIAFPA GASEGYATGK LYLDEDELPE
801: MKLGNGQSTY VDFYASVGNG TMKMWSQVKE GKFALSKGWV IEKVSVLGLR GAGQVSEIQI NGSPMTKKIE VSSKEHTYVI GLEDEEENKS VMVEVRGLEM
901: LVGKDFNMSW KMGIN

Arabidopsis Description

XYL1Alpha-xylosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y7]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.