Factsheet for TraesCS2A01G548900.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	extracellular

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G550400.1	Wheat	endoplasmic reticulum	96.65	96.65
TraesCS2B01G580100.1	Wheat	endoplasmic reticulum	94.8	94.8
HORVU2Hr1G120920.3	Barley	endoplasmic reticulum, extracellular, vacuole	88.22	87.31
TraesCS2A01G548700.1	Wheat	mitochondrion	76.1	84.16
TraesCS2A01G549700.1	Wheat	cytosol, extracellular, vacuole	23.79	81.75
TraesCS2A01G549800.1	Wheat	extracellular, vacuole	54.16	79.63
TraesCS2A01G549500.1	Wheat	golgi	79.33	79.61
TraesCS2A01G548500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	79.21	79.49
TraesCS2A01G548600.1	Wheat	endoplasmic reticulum, extracellular, vacuole	79.1	79.37
TraesCS2A01G549600.1	Wheat	extracellular, vacuole	68.36	76.39
OQU76881	Sorghum	extracellular, vacuole	66.05	68.18
Os06t0675700-01	Rice	nucleus	69.17	67.68
Zm00001d036608_P003	Maize	extracellular	68.01	66.93
Os06t0676700-01	Rice	plastid	68.24	66.7
TraesCS7A01G464200.2	Wheat	endoplasmic reticulum	67.32	65.8
GSMUA_Achr3P23340_001	Banana	cytoskeleton, cytosol, peroxisome	45.38	60.0
GSMUA_Achr11P...	Banana	extracellular, vacuole	46.54	57.33
Solyc04g009630.2.1	Tomato	extracellular	41.45	55.32
VIT_10s0092g00250.t01	Wine grape	cytosol, extracellular, plastid	42.84	53.0
KRH11838	Soybean	vacuole	39.26	52.88
VIT_10s0092g00240.t01	Wine grape	golgi, vacuole	54.97	52.54
Bra006111.1-P	Field mustard	extracellular, vacuole	53.0	51.52
CDX78437	Canola	extracellular, vacuole	53.0	51.46
CDX70414	Canola	extracellular, plastid, vacuole	53.0	51.11
AT5G11720.1	Thale cress	vacuole	53.12	51.0
PGSC0003DMT400041356	Potato	extracellular, vacuole	52.54	50.78
KRH36850	Soybean	nucleus	51.96	50.17
Solyc02g069670.2.1	Tomato	extracellular	48.15	49.58
KRH11840	Soybean	cytosol, nucleus	26.1	47.88
KRH11839	Soybean	extracellular	51.27	47.39
TraesCS3A01G042100.1	Wheat	nucleus	46.42	42.36
VIT_10s0092g00260.t01	Wine grape	extracellular, golgi	11.89	42.04
TraesCS4A01G066900.2	Wheat	golgi	27.02	25.49
TraesCS7A01G134500.1	Wheat	extracellular	24.94	22.0
TraesCS1A01G238900.1	Wheat	plastid	25.4	20.93
TraesCS3A01G184900.1	Wheat	cytosol	13.39	16.93

Protein Annotations

Gene3D:2.60.40.1180	Gene3D:2.60.40.1760	Gene3D:3.20.20.80	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0030246	InterPro:Gal_mutarotase_N	InterPro:Gal_mutarotase_sf_dom	InterPro:Glyco_hydro_31	InterPro:Glyco_hydro_31_AS	InterPro:Glyco_hydro_31_CS
InterPro:Glyco_hydro_31_N_dom	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	PFAM:PF01055	PFAM:PF13802
PFAM:PF16863	ScanProsite:PS00129	ScanProsite:PS00707	PANTHER:PTHR22762	PANTHER:PTHR22762:SF126	SUPFAM:SSF51011
SUPFAM:SSF51445	SUPFAM:SSF74650	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS2A01G548900	EnsemblPlants:TraesCS2A01G548900.1	TIGR:cd06602
TIGR:cd14752	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2A:-:756368643..756371858

Molecular Weight (calculated)

95775.6 Da

IEP (calculated)

6.477

GRAVY (calculated)

-0.177

Length

866 amino acids

Sequence
(BLAST)

001: MTIVSSFADL LALLTILICL LHRCGANYEV ESVDGSGNLL SAKLTLVGGT TQFGPDVKQL NLTASLETDN QLHVRITDAD HQRWEVPQDV IPRPEPALED
101: VLLHYSGMSN ASLPGSSTMS SESSDLTFTI HTAPFRFTVS RRSTGDVLFD TSATLVFKNR YLEVTSALPA KGASLYGLGE QTKRTFRLQQ NDTFTIWNED
201: LERSDLLDIN LYSSHPFYMD VRPGGAAHGV LLLNTNGMDI KYGGSYITYK VIGGVLDFYF FAGPSPLAVV DQYTQLIGRP APMPYWSFGF HQCRYGYKNV
301: ADLEGVVAGY AKAKIPLESI WSDIDYMDGY QDFTLDPVNY PAKLLRPFVD RLHNSSQKYV VIIDPAIKKE AAPPQNEAVG LFLQRNGTNY VGRVWPGEVY
401: YPDFMNPRTA EYWARKISEF RRTIPADGLW CDMNEPSNFK AWEPLNEYDD SPYRINNTGI HRNLNNKTVP VSAVHFNGVS EYDAHNLYGL LESRATHDAL
501: LKDTARRPFV LSRATFVGSG RYTAHWTGDN AARWDELAHS INTILNSGLF GIPMMGADIC GFNGNTTQEL CSRWIQLGAF YPFARAHAEK TTVRRELYVW
601: EPTAQSARKA LGMRYRMLPY IYTLMFEAHT TGAPIARPLF FSYPQDADTY GVDRQFLLGR GVLVSPVLEA GATTVDAYFP AGRWFSLHDH SPAITLQTGK
701: RVTLPAPADS ANVHLAGGNI LPLQQPGLTT SATRQSEFHL LVALAENGTA RGELFLDDGE SPEMGGMGGN WTLVRFSCNT EDSKGIITTT VSSHVVQNSY
801: APSQTLVIGK VIFMGLPSPP KGFTVYVNGV ELKAAGTKSR TNGVFSVSGL SLVIGQQFEI KVVMSH

Best Arabidopsis Sequence Match ( AT1G68560.1 )
(BLAST)

001: MASSSSSLAF SLSLLLALIL CFSPTQSYKT IGKGYRLVSI EESPDGGFIG YLQVKQKNKI YGSDITTLRL FVKHETDSRL RVHITDAKQQ RWEVPYNLLP
101: REQPPQVGKV IGKSRKSPIT VQEISGSELI FSYTTDPFTF AVKRRSNHET LFNTTSSLVF KDQYLEISTS LPKEASLYGL GENSQANGIK LVPNEPYTLY
201: TEDVSAINLN TDLYGSHPMY MDLRNVGGKA YAHAVLLLNS NGMDVFYRGD SLTYKVIGGV FDFYFIAGPS PLNVVDQYTQ LIGRPAPMPY WSLGFHQCRW
301: GYHNLSVVED VVDNYKKAKI PLDVIWNDDD HMDGHKDFTL NPVAYPRAKL LAFLDKIHKI GMKYIVINDP GIGVNASYGT FQRAMAADVF IKYEGKPFLA
401: QVWPGPVYFP DFLNPKTVSW WGDEIKRFHD LVPIDGLWID MNEVSNFCSG LCTIPEGKQC PSGEGPGWVC CLDCKNITKT RWDDPPYKIN ATGVVAPVGF
501: KTIATSATHY NGVREYDAHS IYGFSETIAT HKGLLNVQGK RPFILSRSTF VGSGQYAAHW TGDNQGTWQS LQVSISTMLN FGIFGVPMVG SDICGFYPQP
601: TEELCNRWIE VGAFYPFSRD HANYYSPRQE LYQWDTVADS ARNALGMRYK ILPFLYTLNY EAHMTGAPIA RPLFFSFPEY TECYGNSRQF LLGSSFMISP
701: VLEQGKTEVE ALFPPGSWYH MFDMTQAVVS KNGKRVTLPA PLNFVNVHLY QNTILPTQQG GLISKDARTT PFSLVIAFPA GASEGYATGK LYLDEDELPE
801: MKLGNGQSTY VDFYASVGNG TMKMWSQVKE GKFALSKGWV IEKVSVLGLR GAGQVSEIQI NGSPMTKKIE VSSKEHTYVI GLEDEEENKS VMVEVRGLEM
901: LVGKDFNMSW KMGIN

Arabidopsis Description

XYL1Alpha-xylosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y7]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.