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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • extracellular 7
  • endoplasmic reticulum 5
  • vacuole 6
  • plasma membrane 5
  • golgi 6
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:plastid, secretory
BaCelLo:secretory
EpiLoc:golgi
iPSORT:secretory
MultiLoc:vacuole
Plant-mPloc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:extracellular
 nucleus: 19621931
cytosol: 19685898
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 19685898 doi
KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita
Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.
msms PMID: 26035336 doi
M Li, X Yin, K Sakata, P Yang, S Komatsu
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os06t0676700-01 Rice plastid 89.15 89.05
OQU76881 Sorghum extracellular, vacuole 74.35 78.43
Zm00001d036608_P003 Maize extracellular 75.93 76.36
TraesCS7A01G464200.2 Wheat endoplasmic reticulum 75.25 75.17
TraesCS7D01G451800.2 Wheat unclear 75.59 71.7
TraesCS7B01G364700.1 Wheat mitochondrion, plastid, vacuole 74.58 71.12
HORVU7Hr1G106540.2 Barley cytosol 74.01 70.28
TraesCS2A01G549800.1 Wheat extracellular, vacuole 46.44 69.78
TraesCS2A01G548900.1 Wheat unclear 67.68 69.17
HORVU2Hr1G120870.1 Barley mitochondrion 53.56 69.0
TraesCS2D01G550400.1 Wheat endoplasmic reticulum 67.46 68.94
TraesCS2B01G580100.1 Wheat endoplasmic reticulum 67.23 68.71
TraesCS2B01G580200.1 Wheat endoplasmic reticulum 67.01 68.48
TraesCS2D01G550500.1 Wheat golgi 66.33 68.02
TraesCS2A01G548600.1 Wheat endoplasmic reticulum, extracellular, vacuole 66.21 67.9
TraesCS2D01G550600.1 Wheat endoplasmic reticulum 66.44 67.9
TraesCS2A01G548500.1 Wheat endoplasmic reticulum, extracellular, vacuole 66.1 67.79
TraesCS2A01G549500.1 Wheat golgi 65.88 67.56
HORVU2Hr1G120920.3 Barley endoplasmic reticulum, extracellular, vacuole 66.67 67.43
GSMUA_Achr3P23340_001 Banana cytoskeleton, cytosol, peroxisome 49.72 67.18
TraesCS2D01G550700.1 Wheat cytosol, extracellular, vacuole 67.23 66.85
TraesCS2B01G580300.1 Wheat extracellular, plastid, vacuole 67.12 66.74
TraesCS2A01G548700.1 Wheat mitochondrion 58.31 65.9
TraesCS2A01G549700.1 Wheat cytosol, extracellular, vacuole 18.53 65.08
GSMUA_Achr11P... Banana extracellular, vacuole 51.53 64.86
HORVU2Hr1G120880.1 Barley mitochondrion 66.67 63.92
TraesCS2A01G549600.1 Wheat extracellular, vacuole 55.71 63.61
Solyc04g009630.2.1 Tomato extracellular 43.73 59.63
VIT_10s0092g00250.t01 Wine grape cytosol, extracellular, plastid 45.42 57.43
KRH11838 Soybean vacuole 41.47 57.08
VIT_10s0092g00240.t01 Wine grape golgi, vacuole 57.29 55.96
KRH36850 Soybean nucleus 55.93 55.18
PGSC0003DMT400041356 Potato extracellular, vacuole 55.59 54.91
Bra006111.1-P Field mustard extracellular, vacuole 54.92 54.55
AT5G11720.1 Thale cress vacuole 55.59 54.55
CDX78437 Canola extracellular, vacuole 54.8 54.37
CDX70414 Canola extracellular, plastid, vacuole 55.14 54.34
KRH11840 Soybean cytosol, nucleus 28.02 52.54
Solyc02g069670.2.1 Tomato extracellular 49.83 52.44
KRH11839 Soybean extracellular 55.25 52.19
Os01t0130400-01 Rice extracellular 47.91 45.49
VIT_10s0092g00260.t01 Wine grape extracellular, golgi 11.3 40.82
Os03t0216600-01 Rice plastid 26.44 27.15
Os07t0421300-01 Rice nucleus, plasma membrane, vacuole 25.2 22.76
Os07t0420700-01 Rice plasma membrane 25.2 21.65
Os01t0268600-01 Rice plastid 17.4 16.52
Protein Annotations
Gene3D:2.60.40.1180Gene3D:2.60.40.1760Gene3D:3.20.20.80EntrezGene:4341824MapMan:50.3.2EMBL:AK119824
ProteinID:BAD45910.1ProteinID:BAF20261.1ProteinID:BAS99103.1CHEMBL:CHEMBL1163102ProteinID:EEE66212.1GO:GO:0000023
GO:GO:0003674GO:GO:0003824GO:GO:0004553GO:GO:0004558GO:GO:0005488GO:GO:0005975
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016787GO:GO:0016798GO:GO:0030246
GO:GO:0032450GO:GO:0090599InterPro:Gal_mutarotase_NInterPro:Gal_mutarotase_sf_domInterPro:Glyco_hydro_31InterPro:Glyco_hydro_31_AS
InterPro:Glyco_hydro_31_CSInterPro:Glyco_hydro_31_N_domInterPro:Glyco_hydro_bInterPro:Glycoside_hydrolase_SFInterPro:IPR013780EnsemblPlantsGene:Os06g0675700
EnsemblPlants:Os06t0675700-01PFAM:PF01055PFAM:PF13802PFAM:PF16863ScanProsite:PS00129ScanProsite:PS00707
PANTHER:PTHR22762PANTHER:PTHR22762:SF126UniProt:Q653V7SUPFAM:SSF51011SUPFAM:SSF51445SUPFAM:SSF74650
SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI000043A451RefSeq:XP_015643120.1SEG:seg:
Description
Similar to High pI alpha-glucosidase. (Os06t0675700-01)
Coordinates
chr6:-:28045479..28054033
Molecular Weight (calculated)
96340.9 Da
IEP (calculated)
8.779
GRAVY (calculated)
-0.060
Length
885 amino acids
Sequence
(BLAST)
001: MMGSPPAPPA RRLGALAVFL LALFLAAPWG VDCGYNVASV AGSKNRLRAR LELAGGGGGA APELGPDVRR LSLTASLETD SRLHVRITDA DHPRWEVPQD
101: VIPRPSPDSF LAATRPGGGR VLSTATSDLT FAIHTSPFRF TVTRRSTGDV LFDTTPNLVF KDRYLELTSS LPPPGRASLY GLGEQTKRTF RLQRNDTFTL
201: WNSDIAAGNV DLNLYGSHPF YMDVRSGGGG GGGAAHGVLL LNSNGMDVIY GGSYVTYKVI GGVLDFYFFA GPSPLAVVDQ YTQLIGRPAP MPYWSFGFHQ
301: CRYGYKNVAD LEGVVAGYAK ARIPLEVMWT DIDYMDAYKD FTLDPVNFPA DRMRPFVDRL HRNGQKFVVI IDPGINVNTT YGTFVRGMKQ DIFLKWNGSN
401: YLGVVWPGNV YFPDFLNPRA AEFWAREIAA FRRTLPVDGL WVDMNEISNF VDPPPLNAID DPPYRINNSG VRRPINNKTV PASAVHYGGV AEYDAHNLFG
501: FLEARATHDA LLRDTGRRPF VLSRSTFVGS GRYTAHWTGD NAATWEDLHY SINTMLSFGL FGIPMIGADI CGFGGNTTEE LCSRWIQLGA FYPFSRDHSA
601: IGTVRRELYL WESVARSARK ALGLRYRLLP YLYTLMYEAH TTGAPIARPL FFSYPGDVET YGIDRQFLLG RGVLVSPVLE PGATTVTAYF PAGRWFSLYD
701: FSLAVATKTG KRVTLPAPAD TVNVHVAGGN ILTLQQPALT SSRVRQSVVH LLVALADDGT ATGDLFLDDG ESPEMAGPRS RWSQIKFSGA TESGGGVVRV
801: RSHVVHDSYA PSRTMAIGKV VLMGLRSAAP PKGFAVYANG VQVNASTAVG GAAGSPEKGA LGVAHVSGLT LVVGQEFDLK VVMTY
Best Arabidopsis Sequence Match ( AT5G11720.1 )
(BLAST)
001: MSSLHWFPNI FIVVVVFFSL RSSQVVLEEE ESTVVGYGYV VRSVGVDSNR QVLTAKLDLI KPSSVYAPDI KSLNLHVSLE TSERLRIRIT DSSQQRWEIP
101: ETVIPRAGNH SPRRFSTEED GGNSPENNFL ADPSSDLVFT LHNTTPFGFS VSRRSSGDIL FDTSPDSSDS NTYFIFKDQF LQLSSALPEN RSNLYGIGEH
201: TKRSFRLIPG ETMTLWNADI GSENPDVNLY GSHPFYMDVR GSKGNEEAGT THGVLLLNSN GMDVKYEGHR ITYNVIGGVI DLYVFAGPSP EMVMNQYTEL
301: IGRPAPMPYW SFGFHQCRYG YKNVSDLEYV VDGYAKAGIP LEVMWTDIDY MDGYKDFTLD PVNFPEDKMQ SFVDTLHKNG QKYVLILDPG IGVDSSYGTY
401: NRGMEADVFI KRNGEPYLGE VWPGKVYFPD FLNPAAATFW SNEIKMFQEI LPLDGLWIDM NELSNFITSP LSSGSSLDDP PYKINNSGDK RPINNKTVPA
501: TSIHFGNISE YDAHNLYGLL EAKATHQAVV DITGKRPFIL SRSTFVSSGK YTAHWTGDNA AKWEDLAYSI PGILNFGLFG IPMVGADICG FSHDTTEELC
601: RRWIQLGAFY PFARDHSSLG TARQELYLWD SVASSARKVL GLRMRLLPHL YTLMYEAHVS GNPIARPLFF SFPQDTKTYE IDSQFLIGKS IMVSPALKQG
701: AVAVDAYFPA GNWFDLFNYS FAVGGDSGKH VRLDTPADHV NVHVREGSIV AMQGEALTTR DARKTPYQLL VVASRLENIS GELFLDDGEN LRMGAGGGNR
801: DWTLVKFRCY VTGKSVVLRS EVVNPEYASK MKWSIGKVTF VGFENVENVK TYEVRTSERL RSPRISLIKT VSDNDDPRFL SVEVSKLSLL VGKKFEMRLR
901: LT
Arabidopsis Description
AT5g11720/T22P22_110 [Source:UniProtKB/TrEMBL;Acc:Q9LYF8]
SUBAcon: [vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.