Factsheet for Solyc04g009630.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 3
golgi 1
extracellular 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 26583031
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26583031 doi

F Gawehns, L Ma, O Bruning, PM Houterman, S Boeren, BJ Cornelissen, M Rep, FL Takken

Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041356	Potato	extracellular, vacuole	95.69	69.31
KRH11838	Soybean	vacuole	66.72	67.34
VIT_10s0092g00250.t01	Wine grape	cytosol, extracellular, plastid	72.27	67.0
KRH11840	Soybean	cytosol, nucleus	46.53	63.98
VIT_10s0092g00240.t01	Wine grape	golgi, vacuole	73.34	52.54
HORVU2Hr1G120870.1	Barley	mitochondrion	53.62	50.66
KRH36850	Soybean	nucleus	69.34	50.17
AT5G11720.1	Thale cress	vacuole	69.65	50.11
Bra006111.1-P	Field mustard	extracellular, vacuole	68.57	49.94
CDX78437	Canola	extracellular, vacuole	68.57	49.89
CDX70414	Canola	extracellular, plastid, vacuole	68.57	49.55
OQU76881	Sorghum	extracellular, vacuole	61.48	47.56
KRH11839	Soybean	extracellular	68.41	47.39
Solyc02g069670.2.1	Tomato	extracellular	61.02	47.09
TraesCS2A01G548700.1	Wheat	mitochondrion	54.7	45.34
TraesCS2A01G549700.1	Wheat	cytosol, extracellular, vacuole	17.57	45.24
Zm00001d036608_P003	Maize	extracellular	59.94	44.2
Os06t0675700-01	Rice	nucleus	59.63	43.73
Os06t0676700-01	Rice	plastid	58.86	43.12
TraesCS7A01G464200.2	Wheat	endoplasmic reticulum	58.4	42.78
TraesCS2D01G550400.1	Wheat	endoplasmic reticulum	55.78	41.8
TraesCS2D01G550500.1	Wheat	golgi	55.32	41.6
TraesCS7B01G364700.1	Wheat	mitochondrion, plastid, vacuole	59.48	41.59
TraesCS2A01G548900.1	Wheat	unclear	55.32	41.45
TraesCS2B01G580100.1	Wheat	endoplasmic reticulum	55.16	41.34
TraesCS2A01G548500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	54.7	41.14
TraesCS2A01G549500.1	Wheat	golgi	54.7	41.14
TraesCS2B01G580200.1	Wheat	endoplasmic reticulum	54.7	40.99
TraesCS7D01G451800.2	Wheat	unclear	58.86	40.94
TraesCS2A01G548600.1	Wheat	endoplasmic reticulum, extracellular, vacuole	54.39	40.9
TraesCS2D01G550600.1	Wheat	endoplasmic reticulum	54.55	40.88
HORVU2Hr1G120920.3	Barley	endoplasmic reticulum, extracellular, vacuole	55.01	40.8
TraesCS2B01G580300.1	Wheat	extracellular, plastid, vacuole	55.93	40.79
TraesCS2D01G550700.1	Wheat	cytosol, extracellular, vacuole	55.78	40.67
HORVU7Hr1G106540.2	Barley	cytosol	58.09	40.45
TraesCS2A01G549600.1	Wheat	extracellular, vacuole	47.46	39.74
TraesCS2A01G549800.1	Wheat	extracellular, vacuole	36.06	39.73
HORVU2Hr1G120880.1	Barley	mitochondrion	55.78	39.22
Solyc04g007160.1.1	Tomato	extracellular	15.72	37.92
Solyc05g009470.2.1	Tomato	extracellular	51.46	35.99
Solyc04g007150.2.1	Tomato	extracellular	29.74	32.22
Solyc04g049070.2.1	Tomato	plastid	29.89	21.06
Solyc08g075530.2.1	Tomato	plastid	29.12	17.68
Solyc03g094020.2.1	Tomato	extracellular	16.49	12.6
GSMUA_Achr3P23330_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	2.62	10.62
VIT_10s0092g00260.t01	Wine grape	extracellular, golgi	0.46	1.22

Protein Annotations

Gene3D:2.60.40.1180	Gene3D:2.60.40.1760	Gene3D:3.20.20.80	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005488	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009505	GO:GO:0016787	GO:GO:0016798	GO:GO:0030246	GO:GO:0030312	GO:GO:0048046
InterPro:Gal_mutarotase_sf_dom	InterPro:Glyco_hydro_31	InterPro:Glyco_hydro_31_AS	InterPro:Glyco_hydro_31_CS	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF
InterPro:IPR013780	UniProt:K4BPB8	PFAM:PF01055	ScanProsite:PS00129	ScanProsite:PS00707	PANTHER:PTHR22762
PANTHER:PTHR22762:SF121	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF74650	EnsemblPlantsGene:Solyc04g009630.2	EnsemblPlants:Solyc04g009630.2.1
UniParc:UPI0002765A05	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:+:3009140..3012779

Molecular Weight (calculated)

72786.1 Da

IEP (calculated)

6.727

GRAVY (calculated)

-0.120

Length

649 amino acids

Sequence
(BLAST)

001: MDVRSHPGGG TSHGVLLFNS NGMDIVYAGD RITYKVIGGV VDLYFFAGPV PELVMEQYTE LIGRPAPMPY WSFGFHQCRY GYKDITEIKN VVAGYAKAQI
101: PLEVMWTDID HMDGYKDFTL DPINFPLDQM KKFVDTLHQN GQKFVLILDP GISINSSYET YKRGMQADVF IKRNGVPYLG EVWPGKVYFP DFINPRGRVF
201: WSNEIKIFHD LLPIDGLWLD MNELSNFISS PPSPSSTLDN PPYKINNSGG LRPINEKTVP ATSVHFGNTL EYDVHNLYGF LEAKTTNAAL IDVTGKRPFI
301: LSRSTFVGSG KYTAHWTGDN AATWDDLAYS IPSVLSSGLF GIPMVGADIC GFGRNTTEEL CRRWIQLGAF YPFARDHSEK FTIHQELYIW DSVAATARKV
401: LGLRYRLLPY FYTLMFEAHT KGIPIARPLF FSFPEDANTY TIDSQFLIGK GLMISPVLTS GAVSVNAYFP SGTWFNLFNY SNYVNMKSGS YISLDAPPDH
501: INVHLREGNI VVMQGEAMTT RAARDTPFEL VVAINNWGNS SGEVFLDDGE DVEMGGEGGK WSLVKFHTNV VNKKLYLRSN VVNEEFALSK NWRIHKVTFL
601: GLKKGVSKIN AYNLTTKIRT KIDKSAFGVL EMGGLSVLIG KEFTIELTL

Best Arabidopsis Sequence Match ( AT5G11720.1 )
(BLAST)

001: MSSLHWFPNI FIVVVVFFSL RSSQVVLEEE ESTVVGYGYV VRSVGVDSNR QVLTAKLDLI KPSSVYAPDI KSLNLHVSLE TSERLRIRIT DSSQQRWEIP
101: ETVIPRAGNH SPRRFSTEED GGNSPENNFL ADPSSDLVFT LHNTTPFGFS VSRRSSGDIL FDTSPDSSDS NTYFIFKDQF LQLSSALPEN RSNLYGIGEH
201: TKRSFRLIPG ETMTLWNADI GSENPDVNLY GSHPFYMDVR GSKGNEEAGT THGVLLLNSN GMDVKYEGHR ITYNVIGGVI DLYVFAGPSP EMVMNQYTEL
301: IGRPAPMPYW SFGFHQCRYG YKNVSDLEYV VDGYAKAGIP LEVMWTDIDY MDGYKDFTLD PVNFPEDKMQ SFVDTLHKNG QKYVLILDPG IGVDSSYGTY
401: NRGMEADVFI KRNGEPYLGE VWPGKVYFPD FLNPAAATFW SNEIKMFQEI LPLDGLWIDM NELSNFITSP LSSGSSLDDP PYKINNSGDK RPINNKTVPA
501: TSIHFGNISE YDAHNLYGLL EAKATHQAVV DITGKRPFIL SRSTFVSSGK YTAHWTGDNA AKWEDLAYSI PGILNFGLFG IPMVGADICG FSHDTTEELC
601: RRWIQLGAFY PFARDHSSLG TARQELYLWD SVASSARKVL GLRMRLLPHL YTLMYEAHVS GNPIARPLFF SFPQDTKTYE IDSQFLIGKS IMVSPALKQG
701: AVAVDAYFPA GNWFDLFNYS FAVGGDSGKH VRLDTPADHV NVHVREGSIV AMQGEALTTR DARKTPYQLL VVASRLENIS GELFLDDGEN LRMGAGGGNR
801: DWTLVKFRCY VTGKSVVLRS EVVNPEYASK MKWSIGKVTF VGFENVENVK TYEVRTSERL RSPRISLIKT VSDNDDPRFL SVEVSKLSLL VGKKFEMRLR
901: LT

Arabidopsis Description

AT5g11720/T22P22_110 [Source:UniProtKB/TrEMBL;Acc:Q9LYF8]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.