Factsheet for Solyc04g049070.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 7
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

plastid: 20363867
plastid: 22908117
plastid: 26371478

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013692	Potato	vacuole	97.5	97.19
VIT_05s0029g01090.t01	Wine grape	endoplasmic reticulum, vacuole	73.18	75.9
CDX81200	Canola	vacuole	52.23	75.04
GSMUA_Achr1P22850_001	Banana	cytosol	48.43	74.83
CDY60045	Canola	cytosol, nucleus, vacuole	51.79	74.42
CDX84449	Canola	vacuole	51.9	74.11
KRH63987	Soybean	endoplasmic reticulum	73.51	74.07
CDY43760	Canola	vacuole	51.68	73.8
Bra024240.1-P	Field mustard	vacuole	71.99	71.99
Bra037754.1-P	Field mustard	vacuole	65.69	71.94
KRH53951	Soybean	cytosol, nucleus, vacuole	64.17	71.64
TraesCS4D01G244900.1	Wheat	cytosol	63.52	70.91
AT5G63840.2	Thale cress	plasma membrane, vacuole	72.2	70.15
Os03t0216600-01	Rice	plastid	65.15	69.61
TraesCS4B01G244500.1	Wheat	golgi	67.86	68.23
EER95268	Sorghum	vacuole	67.54	67.83
HORVU4Hr1G067520.2	Barley	plasma membrane, vacuole	67.21	67.65
TraesCS4A01G066900.2	Wheat	golgi	67.43	67.65
Zm00001d028227_P007	Maize	vacuole	67.21	67.5
Zm00001d048080_P002	Maize	plasma membrane	66.99	67.43
VIT_16s0039g01030.t01	Wine grape	extracellular, plasma membrane	74.81	57.75
Solyc04g009630.2.1	Tomato	extracellular	21.06	29.89
Solyc02g069670.2.1	Tomato	extracellular	23.67	25.92
Solyc05g009470.2.1	Tomato	extracellular	24.65	24.46
Solyc04g007150.2.1	Tomato	extracellular	15.85	24.37
Solyc04g007160.1.1	Tomato	extracellular	6.51	22.3
Solyc08g075530.2.1	Tomato	plastid	23.89	20.58
Solyc03g094020.2.1	Tomato	extracellular	13.03	14.13

Protein Annotations

MapMan:18.1.1.6.2.1	Gene3D:2.60.40.1180	Gene3D:2.60.40.1760	Gene3D:3.20.20.80	GO:GO:0000023	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0004558	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0016798	GO:GO:0030246	GO:GO:0032450
GO:GO:0090599	InterPro:Gal_mutarotase_sf_dom	InterPro:Glyco_hydro_31	InterPro:Glyco_hydro_31_AS	InterPro:Glyco_hydro_31_N_dom	InterPro:Glyco_hydro_b
InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	UniProt:K4BRN5	PFAM:PF01055	PFAM:PF13802	ScanProsite:PS00129
PANTHER:PTHR22762	PANTHER:PTHR22762:SF54	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF74650	SignalP:SignalP-noTM
EnsemblPlantsGene:Solyc04g049070.2	EnsemblPlants:Solyc04g049070.2.1	UniParc:UPI000276661F	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:-:39325432..39333873

Molecular Weight (calculated)

105113.0 Da

IEP (calculated)

6.228

GRAVY (calculated)

-0.489

Length

921 amino acids

Sequence
(BLAST)

001: MRAPLLLYPL LLLLLLATSA YSWKKEEFRN CDQTPFCKRA RSRKPGSCNL RVVDVSISDG DLIAKLVPKE ESEQPNKPLV LTLSVYQDGV MRVKIDEDQN
101: LNPPKKRFEV PEVIEEDFLN TKLWLTRVKE EQIDGGSSSS SVFYLSDGYE GVLRHDPFEV FARESGSGKR VLSINSNGLF AFEQLREKKE GDDWEEKFRS
201: HTDTRPYGPQ SISFDVSFYG ADFVYGIPER ATSFALKPTK GPNVEEYSEP YRLFNLDVFE YLHESPFGLY GSIPFMISHG KARGSSGFFW LNAAEMQIDV
301: LGSGWNSNES SKIMFPSDKH RIDTLWMSES GVVDIFFFIG PGPKDVVRQY TSVTGRPSMP QLFATAYHQC RWNYRDEEDV YNVDSKFDEH DIPYDVLWLD
401: IEHTDGKKYF TWDRVLFPNP EEMQKKLAAK GRHMVTIVDP HIKRDESYHI HKEASAKGYY VKDATGKDYD GWCWPGSSSY TDLLNPEIRS WWSDKFSLDS
501: YVGSTKYLYI WNDMNEPSVF NGPEVTMPRD ALHHGGVEHR ELHNSYGYYF HMATSDGLLK RGDGKDRPFV LARAFFAGSQ RYGAIWTGDN TAEWEHLRVS
601: VPMVLTLSIS GIVFSGADVG GFFGNPDAEL LVRWYQLGAY YPFFRGHAHH DTKRREPWLF GERNTQLMRE AIHVRYMYLP YFYTLFREAN SSGTPVARPL
701: WMEFPGDEKS FSNDEAFMVG NGLLVQGVYT EKAKYVSVYL PGEESWYDLR SASVYKAGHT HKYEVSQDSI PSFQRAGTII PRKDRLRRSS TQMENDPYTL
801: VIALNSSKAA EGELYIDDGK SYEFKQGTFI HRRFTFSNGK LISSNAAPST AGSDTFSSEC TVERIILLGL SPGAKAAIIE PGNKKVEIEL GPLFIQGNRG
901: SVPTIRKPNV RIADDWSIQI L

Best Arabidopsis Sequence Match ( AT5G63840.2 )
(BLAST)

001: MIVFLSVVFW LSSLLPQSKD FHEQGTKMRS LLFVLSLICF CSQTALSWKK EEFRSCDQTP FCKRARSRTP GACSLIVGDV SITDGDLVAK LLPKAPNQGD
101: GDQIKPLILS LSVYKDGIVR LKIDEDHSLN PPKKRFQVPD VVVSEFEEKK IWLQKVATET ISGDTSPSSV VYVSDGYEAV VRHDPFEVYV REKSGDRRRV
201: VSLNSHGLFD FEQLGRKTEG DNWEEKFRTH TDSRPSGPQS ISFDVSFYDS SFVYGIPEHA TSFALKPTKG PGVEESEPYR LFNLDVFEYD HESPFGLYGS
301: IPFMVSHGKS GKTSGFFWLN AAEMQIDVLA NGWDAESGIS LPSSHSRIDT FWMSEAGIVD TFFFVGPEPK DVVKQYASVT GTSAMPQLFA TGYHQCRWNY
401: KDEEDVAQVD SKFDEHDIPY DVLWLDIEHT DGKRYFTWDS VLFPHPEEMQ KKLAAKGRKM VTIVDPHIKR DDSYFLHKEA TQMGYYVKDS SGKDFDGWCW
501: PGSSSYIDML SPEIRKWWGG RFSYKNYVGS TPSLYTWNDM NEPSVFNGPE VTMPRDALHV GGVEHREVHN AYGYYFHMAT SDGLVMREEG KDRPFVLSRA
601: IFPGTQRYGA IWTGDNTAEW EHLRVSIPMI LTLGLTGITF SGADIGGFFG NPEPELLVRW YQVGAYYPFF RGHAHHDTKR REPWLFGERN TELMRDAIHT
701: RYTLLPYFYT LFREANVTGV PVVRPLWMEF PQDEATFSND EAFMVGSGLL VQGVYTKGTT QASVYLPGKE SWYDLRNGKT YVGGKTHKMD APEESIPAFQ
801: KAGTIIPRKD RFRRSSSQMD NDPYTLVVAL NSSQEAEGEL YIDDGKSFEF RRGSYIHRRF VFSKGVLTST NLAPPEARLS SQCLIDRIIL LGHSSGPKSA
901: LVEPLNQKAE IEMGPLRMGG LVASSGTKVL TIRKPGVRVD QDWTVKIL

Arabidopsis Description

RSW3Glycosyl hydrolases family 31 protein [Source:TAIR;Acc:AT5G63840]
SUBAcon: [plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.