Factsheet for VIT_16s0039g01030.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0029g01090.t01	Wine grape	endoplasmic reticulum, vacuole	71.58	96.17
CDX81200	Canola	vacuole	41.49	77.22
CDX84449	Canola	vacuole	41.58	76.9
GSMUA_Achr1P22850_001	Banana	cytosol	38.39	76.85
KRH63987	Soybean	endoplasmic reticulum	58.84	76.81
CDY43760	Canola	vacuole	41.49	76.74
CDY60045	Canola	cytosol, nucleus, vacuole	41.07	76.44
KRH53951	Soybean	cytosol, nucleus, vacuole	52.39	75.76
PGSC0003DMT400013692	Potato	vacuole	58.09	75.0
Solyc04g049070.2.1	Tomato	plastid	57.75	74.81
Bra037754.1-P	Field mustard	vacuole	52.22	74.08
Bra024240.1-P	Field mustard	vacuole	56.92	73.72
AT5G63840.2	Thale cress	plasma membrane, vacuole	57.59	72.47
TraesCS4D01G244900.1	Wheat	cytosol	47.86	69.21
Os03t0216600-01	Rice	plastid	49.96	69.14
Zm00001d028227_P007	Maize	vacuole	51.8	67.39
EER95268	Sorghum	vacuole	51.8	67.39
Zm00001d048080_P002	Maize	plasma membrane	51.63	67.32
TraesCS4B01G244500.1	Wheat	golgi	51.38	66.92
HORVU4Hr1G067520.2	Barley	plasma membrane, vacuole	51.3	66.89
TraesCS4A01G066900.2	Wheat	golgi	50.96	66.23
VIT_02s0087g00050.t01	Wine grape	cytosol	8.13	36.33
VIT_10s0092g00250.t01	Wine grape	cytosol, extracellular, plastid	15.93	27.14
VIT_10s0092g00240.t01	Wine grape	golgi, vacuole	19.36	25.5
VIT_01s0011g03450.t01	Wine grape	extracellular	19.2	24.78
VIT_02s0087g00060.t01	Wine grape	extracellular	4.86	22.39
VIT_02s0033g01410.t01	Wine grape	plastid	19.36	21.85
VIT_10s0092g00260.t01	Wine grape	extracellular, golgi	3.69	17.96
VIT_02s0087g00030.t01	Wine grape	cytosol	5.87	14.11
VIT_08s0007g05100.t01	Wine grape	plastid	10.23	14.01

Protein Annotations

EntrezGene:100248748	wikigene:100248748	EntrezGene:100252868	wikigene:100252868	MapMan:18.1.1.6.2.1	Gene3D:2.130.10.10
Gene3D:2.60.40.1180	Gene3D:2.60.40.1760	Gene3D:3.20.20.80	ProteinID:CCB50553	ProteinID:CCB50553.1	UniProt:F6HEA7
EMBL:FN595750	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005488	GO:GO:0005515
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0030246	InterPro:Gal_mutarotase_sf_dom
InterPro:Glyco_hydro_31	InterPro:Glyco_hydro_31_AS	InterPro:Glyco_hydro_31_CS	InterPro:Glyco_hydro_31_N_dom	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF
InterPro:IPR001680	InterPro:IPR013780	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100248748	wikigene:LOC100248748
EntrezGene:LOC100252868	wikigene:LOC100252868	PFAM:PF00400	PFAM:PF01055	PFAM:PF13802	ScanProsite:PS00129
ScanProsite:PS00678	ScanProsite:PS00707	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22762	PANTHER:PTHR22762:SF54
SMART:SM00320	SUPFAM:SSF50978	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF74650	SignalP:SignalP-noTM
UniParc:UPI0002108A64	ArrayExpress:VIT_16s0039g01030	EnsemblPlantsGene:VIT_16s0039g01030	EnsemblPlants:VIT_16s0039g01030.t01	unigene:Vvi.25685	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002268690	RefSeq:XP_002268690.1
RefSeq:XP_002270200	RefSeq:XP_002270200.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr16:+:555079..569982

Molecular Weight (calculated)

135793.0 Da

IEP (calculated)

7.182

GRAVY (calculated)

-0.430

Length

1193 amino acids

Sequence
(BLAST)

0001: MPPNINSTLP LLLLFLLFTL HLSSVSAWKK EEFRTCNQTP FCKRARSRKP HSSSLFATDV AILDGALTAN LRQPPPESPD QDQIKPLLFT LSVYQNGVVR
0101: VKIDEDPSLD PPKKRFEVPD VILPEFESTK LWLQRFQTET VDGDSGPSSV VYVADGYEAV LRHNPFEVYV REKQGKRRVL SLNSHGLFDF EQLRVKQEGD
0201: DWEERFKGHT DVRPYGPQSI SFDVSFFDAD FVYGIPEHAS SFALRPTRGP GVDDSEPYRL FNLDVFEYIH DSPFGLYGSI PFMLGHGKAR GTSGFFWLNA
0301: AEMQIDVLGS GWDAESGILL PESGSRIDTF WMSEAGIVDT FFFIGPGPKD VVRQYTSVTG MPAMPQLFST AHHQCRWNYR DEEDVENVDS KFDEHDIPYD
0401: VLWLDIDHTD GKRYFTWDRV LFPNPEQMQN KLAAKGRHMV TIVDPHIRRD ESFHLHKEAT SKGYYVKDAT GKDYDGWCWP GSSSYPDMLN PEIRSWWSEK
0501: FSLKNYVGST PWLYIWNDMN EPSVFNGPEV TMPRDALHYG GVEHRELHNA YGYYFHMATS DGLVKRGDGK DRPFVLSRAF FPGSQRHGAI WTGDNTADWD
0601: QLRVSVPMIL TLGLTGMTFS GADVGGYFGN PEMELLVRWY QLGAYYPFFR AHAHQDTKRR EPWLFGERNM ELMRDAIHTR YALLPYFYTL FREANTSGVP
0701: VMRPLWMEFP SDKATFSNDE AFMVGNSLLV QGIYTERAKY ASVYLPGGQS WYDLRTGIIY KGGTTHKLEV SEETIPAFHR AGTIIPRKDR YRRSSTLMAN
0801: DPYTLVIALN SSHAAEGELY IDNGKSFEFK QGAYIHRHFV FSDGKLTSSS LVPNASKTLF SSACVIERII VLGHSSGPKN ALIEPSNRKA EIELGPLWLR
0901: RGKSAPVLTI RKPNLRTLRG GHQSRVGSLD WKNHILTTRG MDGKIINNDV RVHSHIVATF RGHWQEVCGL KWSTSGQQLA SGGNDNLLYI WDRSMASMHS
1001: RSQWLHRLED HTAAVKALAW CPFQRNLLAS GGAGSDCCMK FWNTHSGACL NSVDAGSQVC ALLWNKNERE LLSSHGFMQN QLTLWMYPSM VKIAELTGHN
1101: QSSFHGSDGH TVATAAGDET QVLECFWHPR SEKSCTKSRA SWAISSLRRI HSFQEWENWK ARVENGIQFT KGTRPFCYYY GVLRILVCNC VWK

Best Arabidopsis Sequence Match ( AT5G63840.2 )
(BLAST)

001: MIVFLSVVFW LSSLLPQSKD FHEQGTKMRS LLFVLSLICF CSQTALSWKK EEFRSCDQTP FCKRARSRTP GACSLIVGDV SITDGDLVAK LLPKAPNQGD
101: GDQIKPLILS LSVYKDGIVR LKIDEDHSLN PPKKRFQVPD VVVSEFEEKK IWLQKVATET ISGDTSPSSV VYVSDGYEAV VRHDPFEVYV REKSGDRRRV
201: VSLNSHGLFD FEQLGRKTEG DNWEEKFRTH TDSRPSGPQS ISFDVSFYDS SFVYGIPEHA TSFALKPTKG PGVEESEPYR LFNLDVFEYD HESPFGLYGS
301: IPFMVSHGKS GKTSGFFWLN AAEMQIDVLA NGWDAESGIS LPSSHSRIDT FWMSEAGIVD TFFFVGPEPK DVVKQYASVT GTSAMPQLFA TGYHQCRWNY
401: KDEEDVAQVD SKFDEHDIPY DVLWLDIEHT DGKRYFTWDS VLFPHPEEMQ KKLAAKGRKM VTIVDPHIKR DDSYFLHKEA TQMGYYVKDS SGKDFDGWCW
501: PGSSSYIDML SPEIRKWWGG RFSYKNYVGS TPSLYTWNDM NEPSVFNGPE VTMPRDALHV GGVEHREVHN AYGYYFHMAT SDGLVMREEG KDRPFVLSRA
601: IFPGTQRYGA IWTGDNTAEW EHLRVSIPMI LTLGLTGITF SGADIGGFFG NPEPELLVRW YQVGAYYPFF RGHAHHDTKR REPWLFGERN TELMRDAIHT
701: RYTLLPYFYT LFREANVTGV PVVRPLWMEF PQDEATFSND EAFMVGSGLL VQGVYTKGTT QASVYLPGKE SWYDLRNGKT YVGGKTHKMD APEESIPAFQ
801: KAGTIIPRKD RFRRSSSQMD NDPYTLVVAL NSSQEAEGEL YIDDGKSFEF RRGSYIHRRF VFSKGVLTST NLAPPEARLS SQCLIDRIIL LGHSSGPKSA
901: LVEPLNQKAE IEMGPLRMGG LVASSGTKVL TIRKPGVRVD QDWTVKIL

Arabidopsis Description

RSW3Glycosyl hydrolases family 31 protein [Source:TAIR;Acc:AT5G63840]
SUBAcon: [plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.