Factsheet for VIT_02s0087g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
extracellular 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56225	Canola	plasma membrane, plastid, vacuole	58.27	51.98
VIT_02s0033g01410.t01	Wine grape	plastid	86.29	40.49
Solyc08g075530.2.1	Tomato	plastid	68.75	31.9
Bra028332.1-P	Field mustard	cytosol, nucleus, peroxisome	63.51	31.85
Os07t0420700-01	Rice	plasma membrane	62.9	30.29
TraesCS7A01G134500.1	Wheat	extracellular	59.07	29.84
AT3G23640.3	Thale cress	plastid	62.9	29.43
TraesCS1B01G251000.1	Wheat	plastid	61.69	29.42
TraesCS1D01G239100.1	Wheat	golgi, plastid	61.69	29.34
TraesCS1A01G238900.1	Wheat	plastid	62.1	29.31
TraesCS7B01G035700.1	Wheat	plasma membrane, vacuole	55.65	28.9
Os07t0421300-01	Rice	nucleus, plasma membrane, vacuole	56.25	28.47
CDY18102	Canola	plastid	61.29	28.46
Zm00001d005453_P007	Maize	plastid	61.29	28.12
GSMUA_Achr11P...	Banana	plastid	64.31	28.08
HORVU1Hr1G057330.1	Barley	cytosol, mitochondrion	61.29	27.97
Zm00001d019497_P004	Maize	cytosol, nucleus, plastid	55.85	27.95
TraesCS7D01G133900.2	Wheat	cytosol, nucleus, peroxisome, plastid	59.27	27.89
Bra028330.1-P	Field mustard	cytosol	49.6	27.39
CDY60313	Canola	golgi, vacuole	61.09	27.2
KXG34976	Sorghum	cytosol	47.58	27.1
HORVU7Hr1G028010.9	Barley	plastid	58.06	27.04
OQU88897	Sorghum	mitochondrion	28.02	18.41
VIT_02s0087g00060.t01	Wine grape	extracellular	4.03	7.72
VIT_10s0092g00250.t01	Wine grape	cytosol, extracellular, plastid	10.69	7.57
VIT_01s0011g03450.t01	Wine grape	extracellular	12.7	6.82
VIT_10s0092g00240.t01	Wine grape	golgi, vacuole	11.9	6.51
CDY71267	Canola	plastid	3.63	6.29
VIT_05s0029g01090.t01	Wine grape	endoplasmic reticulum, vacuole	10.69	5.97
VIT_16s0039g01030.t01	Wine grape	extracellular, plasma membrane	14.11	5.87
VIT_02s0087g00050.t01	Wine grape	cytosol	1.41	2.62
VIT_08s0007g05100.t01	Wine grape	plastid	4.03	2.3
VIT_10s0092g00260.t01	Wine grape	extracellular, golgi	0.2	0.41

Protein Annotations

Gene3D:2.60.40.1180	Gene3D:3.20.20.80	MapMan:35.2	ProteinID:CCB52258	ProteinID:CCB52258.1	InterPro:DUF5110
UniProt:F6HJ61	EMBL:FN595769	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0004553	GO:GO:0005488	GO:GO:0005575	GO:GO:0005975	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016787	GO:GO:0016798
InterPro:Glyco_hydro_31	InterPro:Glyco_hydro_b	InterPro:IPR013780	PFAM:PF01055	PFAM:PF17137	PANTHER:PTHR22762
PANTHER:PTHR22762:SF120	UniParc:UPI00021098CF	ArrayExpress:VIT_02s0087g00030	EnsemblPlantsGene:VIT_02s0087g00030	EnsemblPlants:VIT_02s0087g00030.t01	:

Description

No Description!

Coordinates

chr2:-:17073805..17102360

Molecular Weight (calculated)

56127.1 Da

IEP (calculated)

6.132

GRAVY (calculated)

-0.245

Length

496 amino acids

Sequence
(BLAST)

001: MRWDIVCLDK RKGSLGVKSL STLNEALLIK WSWRYAIEQE VLWKCVISGK YGEEEGGWCF RECEEVCRLA LKRRYRLIPH IYTLFYVAHI TGTPVATPTF
101: FADPKDPSLR TVENSFLLGP LLIYARIYQL YSCKVDEHGK AEGVLFEDDG DGYEFTKGGY LLTYYVAELQ SSVVSVRVSK TEGSWKRPKR CLHVQLLLGG
201: GAKIDARGTD GEVLQITMPS EHEVSDLVST SKERYRNCLE SAKLIPDVQE VSGHKGIELS STPIELKSSD WALKVVPWIG GRIISMMHLP SGTQWLHSKI
301: EANGYGEYSG VEYWSAGWSE EYTIVERNLE QAGEEESLKL EGEIDGGLVI ERQISLPKDN SKVFRVDSGI IARNVGAGSG GYSRLVCLRV HPIFNLLHPT
401: ESFVLFVSID GSKHEVWPEA SEQSYEGNLR PNGEWMLVDK CLRLALVNWF DITEVHKCLI HWGTRTVNLE LWSEQRLVSK QSPLTISHEH EVRAIP

Best Arabidopsis Sequence Match ( AT3G23640.3 )
(BLAST)

0001: MERSFVTQAA VSSSSSLTSK ARASSFFFNG RSLPSLNPIS PFLFLPTSRS FALVVKSTLG RNGDKSLLRM TLSGDSSETV EMTSTDMIFE PILEHGVFRF
0101: DCSVDHRKAA FPSVSFKNSK DREVPIVSHI VPAYIPTCGC LQDQQVVTFE FSPGTSFYGT GEVSGQLERT GKRVFTWNTD AWGYGSGTTS LYQSHPWVLV
0201: VLPTGETLGV LADTTRKCEI DLRKEGIIRI ISPASYPIIT FGPFSSPTAV LESLSHAIGT VFMPPKWALG YHQCRWSYMS DKRVAEIAQT FRDKKIPSDV
0301: IWMDIDYMDG FRCFTFDKER FPDPSALAKD LHSNGFKAIW MLDPGIKQEE GYYVYDSGSK NDVWISRADG KPFTGEVWPG PCVFPDYTNS KARSWWANLV
0401: KEFVSNGVDG IWNDMNEPAV FKVVTKTMPE NNIHHGDDEL GGVQNHSHYH NVYGMLMARS TYEGMELADK NKRPFVLTRA GFIGSQRYAA TWTGDNLSNW
0501: EHLHMSISMV LQLGLSGQPL SGPDIGGFAG NATPRLFGRW MGVGAMFPFC RGHSEAGTDD HEPWSFGEEC EEVCRAALKR RYQLLPHFYT LFYIAHTTGA
0601: PVAAPIFFAD PIDSRLRAVE NGFLLGPLLI YASTLSSQGS HELQHILPRG IWHRFDFADS HPDLPTLYLQ GGSIISLAPP HLHVGEFSLS DDLTLLVSLD
0701: ENGKAKGLLF EDDGDGYGYT KGRFLVTHYI AERDSSTVTV KVSKTEGDWQ RPNRRVHVQL LLGGGAMLDA WGMDGEFIHI KVPSESGISE LISTSNERFK
0801: LHMENTKLIP EKEVVPGQKG MELSKEPVEL SSGDWKLNIV PWVGGRILSM THVPSGIQWL HSRIDINGYE EYSGTEYRSA GCTEEYNVIE RDLEHAGEEE
0901: SLILEGDVGG GLVLRRKISI AKDNQRVFRI ASSIEARSVG AGSGGFSRLV CLRVHPTFTL LHPTESFVSF TSIDGSKHEV WPDSGDQIYE GNNLPHGKWM
1001: LVDKSLNLRM VNRFDVSQVF KCIIHWDCGT VNLELWSKER PVSKESPLKI EHEYEVTSFP

Arabidopsis Description

HGL1Heteroglycan glucosidase 1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTS6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.