Factsheet for VIT_02s0033g01410.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0087g00050.t01	Wine grape	cytosol	22.89	90.64
VIT_02s0087g00060.t01	Wine grape	extracellular	21.95	89.58
VIT_02s0087g00030.t01	Wine grape	cytosol	40.49	86.29
KRH62685	Soybean	nucleus	74.55	74.83
Solyc08g075530.2.1	Tomato	plastid	73.79	72.97
KXG34976	Sorghum	cytosol	59.7	72.45
TraesCS7A01G134500.1	Wheat	extracellular	65.09	70.06
TraesCS7B01G035700.1	Wheat	plasma membrane, vacuole	63.2	69.95
Os07t0420700-01	Rice	plasma membrane	66.41	68.16
TraesCS1B01G251000.1	Wheat	plastid	66.79	67.88
TraesCS1D01G239100.1	Wheat	golgi, plastid	66.7	67.59
Zm00001d019497_P004	Maize	cytosol, nucleus, plastid	63.29	67.51
TraesCS1A01G238900.1	Wheat	plastid	67.08	67.46
Os07t0421300-01	Rice	nucleus, plasma membrane, vacuole	61.59	66.43
Zm00001d005453_P007	Maize	plastid	66.79	65.31
TraesCS7D01G133900.2	Wheat	cytosol, nucleus, peroxisome, plastid	65.09	65.28
GSMUA_Achr11P...	Banana	plastid	70.1	65.23
HORVU7Hr1G028010.9	Barley	plastid	65.18	64.69
HORVU1Hr1G057330.1	Barley	cytosol, mitochondrion	66.04	64.21
OQU88897	Sorghum	mitochondrion	43.8	61.32
VIT_10s0092g00250.t01	Wine grape	cytosol, extracellular, plastid	17.98	27.14
VIT_10s0092g00240.t01	Wine grape	golgi, vacuole	21.38	24.94
VIT_05s0029g01090.t01	Wine grape	endoplasmic reticulum, vacuole	20.53	24.44
VIT_01s0011g03450.t01	Wine grape	extracellular	20.81	23.81
VIT_16s0039g01030.t01	Wine grape	extracellular, plasma membrane	21.85	19.36
VIT_08s0007g05100.t01	Wine grape	plastid	10.97	13.32
VIT_10s0092g00260.t01	Wine grape	extracellular, golgi	2.84	12.24

Protein Annotations

EntrezGene:100254505	wikigene:100254505	Gene3D:2.60.40.1180	Gene3D:2.60.40.1760	Gene3D:3.20.20.80	MapMan:50.3.2
EMBL:AM427612	EMBL:AM437727	ProteinID:CAN64579	ProteinID:CAN64579.1	ProteinID:CAN71739	ProteinID:CAN71739.1
ProteinID:CBI37476	ProteinID:CBI37476.3	UniProt:D7U407	InterPro:DUF5110	EMBL:FN596505	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	GO:GO:0016798	GO:GO:0030246	InterPro:Gal_mutarotase_sf_dom	InterPro:Glyco_hydro_31	InterPro:Glyco_hydro_31_AS
InterPro:Glyco_hydro_31_N_dom	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	EntrezGene:LOC100254505	wikigene:LOC100254505
PFAM:PF01055	PFAM:PF13802	PFAM:PF17137	ScanProsite:PS00129	PANTHER:PTHR22762	PANTHER:PTHR22762:SF120
SUPFAM:SSF51445	SUPFAM:SSF74650	TIGR:TC52953	UniParc:UPI0001BE46EE	ArrayExpress:VIT_02s0033g01410	EnsemblPlantsGene:VIT_02s0033g01410
EnsemblPlants:VIT_02s0033g01410.t01	unigene:Vvi.9418	RefSeq:XP_002263148	RefSeq:XP_002263148.2	RefSeq:XP_002263148.3	SEG:seg

Description

No Description!

Coordinates

chr2:-:16907202..16934203

Molecular Weight (calculated)

117734.0 Da

IEP (calculated)

5.876

GRAVY (calculated)

-0.287

Length

1057 amino acids

Sequence
(BLAST)

0001: MAGALTFSSD GVGALGFWKT HQYGFISGGF NRPLLKNCVP RHPSSPSRPF RKRVKKRLIG ERLVIKMAEY EGKVVPADFT SGNMLFEPIL EEGVFRFDCS
0101: SDDRDAAFPS LSFTNQKNRD MPIMNHKVPM YTPTFECVLG QQIVTIELPT GTSFYGTGEV SGQLERTGKR VFTWNTDAWG YGSGTTSLYQ SHPWVLAVLP
0201: NGEALGILAD TTRRCEIDLQ KESIVKFSAS SSYPIITFGP FASPTAVLTS LSHAIGTVFM PPKWSLGYQQ CRWSYDSAVR VLEVARTFRE KGIPCDVIWM
0301: DIDYMDGFRC FTFDQERFSD PKSLGKDLHL NGFKAIWMLD PGIKQEDGYF VYDSGSANDV WIHKADGTPF VGKVWPGPCV FPDFTQSKAR SWWACLVKDF
0401: ISNGVDGIWN DMNEPAVFKT VTKTMPEDNV HRGDAELGGC QNHSHYHNVY GMLMARSTYE GMKLANENKR PFVLTRAGYI GSQRYAATWT GDNLSNWDHL
0501: HMSISMVLQL GLSGQPLSGP DIGGFAGNAT PRLFGRWMGV GAMFPFCRGH SETGTVDHEP WSFGEECEEV CRLALKRRYR LIPHIYTLFY MAHTTGTPVA
0601: TPTFFADPKD PSLRTVENSF LMGPLLIYAS TIPDQGLDEL QHKLPKGIWL SFDFDDSHPD LPALYLQGGS IIPLGPPHQH VGEADPTDDL ILLVALDEHG
0701: KAEGVLFEDD GDGYEFTTGG YLLTYYVAEL QSSVVSVRVS KTEGSWKRPK RGLHVQLLLG GGAKIDAQGT DGEVLQITMP SEHEVSDLVS TSKEQYRNRL
0801: ESAKHIPDVQ EVSGHKGIEL SSTPIELKSG DWALKVVPWI GGRIISMMHL PSGTQWLHSR IEANGYEEYS GVEYRSAGWS EEYTIVERNL EQAGEEESLK
0901: LEGEIGGGLV IERQISLPKD NSKVFRVDSG IIAHNVGAGS GGYSRLVCLR VHPMFNLLHP TESFVSFVSI DGSKHEVWPE AGEQSYEGNL RPNGEWMLVD
1001: KCLGLALVNR FDITEVHKCL VHWGTGTVNL ELWSEQRPVS KQSPLTISHE YEVRVIP

Best Arabidopsis Sequence Match ( AT3G23640.3 )
(BLAST)

0001: MERSFVTQAA VSSSSSLTSK ARASSFFFNG RSLPSLNPIS PFLFLPTSRS FALVVKSTLG RNGDKSLLRM TLSGDSSETV EMTSTDMIFE PILEHGVFRF
0101: DCSVDHRKAA FPSVSFKNSK DREVPIVSHI VPAYIPTCGC LQDQQVVTFE FSPGTSFYGT GEVSGQLERT GKRVFTWNTD AWGYGSGTTS LYQSHPWVLV
0201: VLPTGETLGV LADTTRKCEI DLRKEGIIRI ISPASYPIIT FGPFSSPTAV LESLSHAIGT VFMPPKWALG YHQCRWSYMS DKRVAEIAQT FRDKKIPSDV
0301: IWMDIDYMDG FRCFTFDKER FPDPSALAKD LHSNGFKAIW MLDPGIKQEE GYYVYDSGSK NDVWISRADG KPFTGEVWPG PCVFPDYTNS KARSWWANLV
0401: KEFVSNGVDG IWNDMNEPAV FKVVTKTMPE NNIHHGDDEL GGVQNHSHYH NVYGMLMARS TYEGMELADK NKRPFVLTRA GFIGSQRYAA TWTGDNLSNW
0501: EHLHMSISMV LQLGLSGQPL SGPDIGGFAG NATPRLFGRW MGVGAMFPFC RGHSEAGTDD HEPWSFGEEC EEVCRAALKR RYQLLPHFYT LFYIAHTTGA
0601: PVAAPIFFAD PIDSRLRAVE NGFLLGPLLI YASTLSSQGS HELQHILPRG IWHRFDFADS HPDLPTLYLQ GGSIISLAPP HLHVGEFSLS DDLTLLVSLD
0701: ENGKAKGLLF EDDGDGYGYT KGRFLVTHYI AERDSSTVTV KVSKTEGDWQ RPNRRVHVQL LLGGGAMLDA WGMDGEFIHI KVPSESGISE LISTSNERFK
0801: LHMENTKLIP EKEVVPGQKG MELSKEPVEL SSGDWKLNIV PWVGGRILSM THVPSGIQWL HSRIDINGYE EYSGTEYRSA GCTEEYNVIE RDLEHAGEEE
0901: SLILEGDVGG GLVLRRKISI AKDNQRVFRI ASSIEARSVG AGSGGFSRLV CLRVHPTFTL LHPTESFVSF TSIDGSKHEV WPDSGDQIYE GNNLPHGKWM
1001: LVDKSLNLRM VNRFDVSQVF KCIIHWDCGT VNLELWSKER PVSKESPLKI EHEYEVTSFP

Arabidopsis Description

HGL1Heteroglycan glucosidase 1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTS6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.