Factsheet for VIT_02s0087g00060.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
extracellular 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71267	Canola	plastid	50.97	46.15
VIT_02s0033g01410.t01	Wine grape	plastid	89.58	21.95
OQU88897	Sorghum	mitochondrion	61.78	21.19
KXG34976	Sorghum	cytosol	62.93	18.71
Solyc08g075530.2.1	Tomato	plastid	69.88	16.93
Bra028332.1-P	Field mustard	cytosol, nucleus, peroxisome	62.55	16.38
AT3G23640.3	Thale cress	plastid	65.64	16.04
TraesCS7B01G035700.1	Wheat	plasma membrane, vacuole	58.69	15.92
TraesCS7A01G134500.1	Wheat	extracellular	59.46	15.68
TraesCS1B01G251000.1	Wheat	plastid	62.93	15.67
Zm00001d019497_P004	Maize	cytosol, nucleus, plastid	59.85	15.64
TraesCS1D01G239100.1	Wheat	golgi, plastid	62.55	15.53
Os07t0421300-01	Rice	nucleus, plasma membrane, vacuole	58.69	15.51
TraesCS1A01G238900.1	Wheat	plastid	62.55	15.41
Bra028330.1-P	Field mustard	cytosol	53.28	15.37
CDY18102	Canola	plastid	63.32	15.36
Os07t0420700-01	Rice	plasma membrane	60.62	15.24
GSMUA_Achr11P...	Banana	plastid	66.02	15.05
HORVU1Hr1G057330.1	Barley	cytosol, mitochondrion	62.55	14.9
Zm00001d005453_P007	Maize	plastid	62.16	14.89
HORVU7Hr1G028010.9	Barley	plastid	61.0	14.84
CDY60313	Canola	golgi, vacuole	62.93	14.63
TraesCS7D01G133900.2	Wheat	cytosol, nucleus, peroxisome, plastid	59.07	14.52
VIT_10s0092g00260.t01	Wine grape	extracellular, golgi	9.65	10.2
VIT_10s0092g00240.t01	Wine grape	golgi, vacuole	23.94	6.84
VIT_05s0029g01090.t01	Wine grape	endoplasmic reticulum, vacuole	23.17	6.76
VIT_01s0011g03450.t01	Wine grape	extracellular	21.62	6.06
VIT_10s0092g00250.t01	Wine grape	cytosol, extracellular, plastid	14.29	5.29
VIT_16s0039g01030.t01	Wine grape	extracellular, plasma membrane	22.39	4.86
VIT_02s0087g00030.t01	Wine grape	cytosol	7.72	4.03
VIT_08s0007g05100.t01	Wine grape	plastid	13.13	3.9
VIT_02s0087g00050.t01	Wine grape	cytosol	3.09	3.0
CDY56225	Canola	plasma membrane, plastid, vacuole	0.0	0.0

Protein Annotations

Gene3D:2.60.40.1760	Gene3D:3.20.20.80	MapMan:35.1	ProteinID:CCB52256	ProteinID:CCB52256.1	UniProt:F6HJ59
EMBL:FN595769	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005488	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	GO:GO:0030246	InterPro:Gal_mutarotase_sf_dom
InterPro:Glyco_hydro_31	InterPro:Glyco_hydro_31_N_dom	InterPro:Glycoside_hydrolase_SF	PFAM:PF01055	PFAM:PF13802	PANTHER:PTHR22762
PANTHER:PTHR22762:SF120	SUPFAM:SSF51445	SUPFAM:SSF74650	UniParc:UPI00021098CD	ArrayExpress:VIT_02s0087g00060	EnsemblPlantsGene:VIT_02s0087g00060
EnsemblPlants:VIT_02s0087g00060.t01	:	:	:	:	:

Description

No Description!

Coordinates

chr2:-:17133923..17140933

Molecular Weight (calculated)

29081.7 Da

IEP (calculated)

4.668

GRAVY (calculated)

-0.009

Length

259 amino acids

Sequence
(BLAST)

001: MAEYEGKVVP ADFTSGNMLF KPILEEGVFL FDCSSDDRDA AFPSLSFTNQ KNRDTPIMNH KVPMYTPTFE CVSGKQIVTI ELPTGTSFYG TGEVSGQLER
101: TGKRVFTWNI AAWGFDSGTT SLYQSHPWVL AVLPNGEALG ILADTMRCCE VDLQKEWTVK FIASSSYLVI TFGPFASPNA VLISLSNAIG TIFMPPKWSL
201: GYQQCRWSYD SAVRVLEVAR TFREKGIPCD VIWMDIDYMD GFRCFTFDQA SYISPIRYL

Best Arabidopsis Sequence Match ( AT3G23640.3 )
(BLAST)

0001: MERSFVTQAA VSSSSSLTSK ARASSFFFNG RSLPSLNPIS PFLFLPTSRS FALVVKSTLG RNGDKSLLRM TLSGDSSETV EMTSTDMIFE PILEHGVFRF
0101: DCSVDHRKAA FPSVSFKNSK DREVPIVSHI VPAYIPTCGC LQDQQVVTFE FSPGTSFYGT GEVSGQLERT GKRVFTWNTD AWGYGSGTTS LYQSHPWVLV
0201: VLPTGETLGV LADTTRKCEI DLRKEGIIRI ISPASYPIIT FGPFSSPTAV LESLSHAIGT VFMPPKWALG YHQCRWSYMS DKRVAEIAQT FRDKKIPSDV
0301: IWMDIDYMDG FRCFTFDKER FPDPSALAKD LHSNGFKAIW MLDPGIKQEE GYYVYDSGSK NDVWISRADG KPFTGEVWPG PCVFPDYTNS KARSWWANLV
0401: KEFVSNGVDG IWNDMNEPAV FKVVTKTMPE NNIHHGDDEL GGVQNHSHYH NVYGMLMARS TYEGMELADK NKRPFVLTRA GFIGSQRYAA TWTGDNLSNW
0501: EHLHMSISMV LQLGLSGQPL SGPDIGGFAG NATPRLFGRW MGVGAMFPFC RGHSEAGTDD HEPWSFGEEC EEVCRAALKR RYQLLPHFYT LFYIAHTTGA
0601: PVAAPIFFAD PIDSRLRAVE NGFLLGPLLI YASTLSSQGS HELQHILPRG IWHRFDFADS HPDLPTLYLQ GGSIISLAPP HLHVGEFSLS DDLTLLVSLD
0701: ENGKAKGLLF EDDGDGYGYT KGRFLVTHYI AERDSSTVTV KVSKTEGDWQ RPNRRVHVQL LLGGGAMLDA WGMDGEFIHI KVPSESGISE LISTSNERFK
0801: LHMENTKLIP EKEVVPGQKG MELSKEPVEL SSGDWKLNIV PWVGGRILSM THVPSGIQWL HSRIDINGYE EYSGTEYRSA GCTEEYNVIE RDLEHAGEEE
0901: SLILEGDVGG GLVLRRKISI AKDNQRVFRI ASSIEARSVG AGSGGFSRLV CLRVHPTFTL LHPTESFVSF TSIDGSKHEV WPDSGDQIYE GNNLPHGKWM
1001: LVDKSLNLRM VNRFDVSQVF KCIIHWDCGT VNLELWSKER PVSKESPLKI EHEYEVTSFP

Arabidopsis Description

HGL1Heteroglycan glucosidase 1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTS6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.