CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18102	Canola	plastid	92.55	96.54
CDY56225	Canola	plasma membrane, plastid, vacuole	41.92	83.99
AT3G23640.3	Thale cress	plastid	78.73	82.74
VIT_02s0087g00050.t01	Wine grape	cytosol	18.58	77.53
CDY71267	Canola	plastid	18.58	72.38
KXG34976	Sorghum	cytosol	52.15	66.7
KRH62685	Soybean	nucleus	62.57	66.19
Solyc08g075530.2.1	Tomato	plastid	62.75	65.39
TraesCS7A01G134500.1	Wheat	extracellular	57.36	65.07
TraesCS7B01G035700.1	Wheat	plasma membrane, vacuole	55.21	64.4
TraesCS1B01G251000.1	Wheat	plastid	58.8	62.98
VIT_02s0087g00060.t01	Wine grape	extracellular	14.63	62.93
TraesCS1D01G239100.1	Wheat	golgi, plastid	58.8	62.8
Zm00001d019497_P004	Maize	cytosol, nucleus, plastid	55.75	62.66
TraesCS1A01G238900.1	Wheat	plastid	59.07	62.61
Os07t0420700-01	Rice	plasma membrane	57.81	62.52
VIT_02s0087g00030.t01	Wine grape	cytosol	27.2	61.09
TraesCS7D01G133900.2	Wheat	cytosol, nucleus, peroxisome, plastid	57.72	61.01
Os07t0421300-01	Rice	nucleus, plasma membrane, vacuole	53.59	60.92
Zm00001d005453_P007	Maize	plastid	58.26	60.04
HORVU7Hr1G028010.9	Barley	plastid	57.09	59.72
HORVU1Hr1G057330.1	Barley	cytosol, mitochondrion	58.08	59.52
GSMUA_Achr11P...	Banana	plastid	60.14	58.98
OQU88897	Sorghum	mitochondrion	38.24	56.42
CDX81200	Canola	vacuole	18.31	31.83
CDY60045	Canola	cytosol, nucleus, vacuole	18.22	31.67
CDY43760	Canola	vacuole	18.22	31.47
CDX84449	Canola	vacuole	18.13	31.32
CDY04236	Canola	extracellular, vacuole	18.31	23.53
CDX78437	Canola	extracellular, vacuole	18.76	23.43
CDY38593	Canola	extracellular, vacuole	18.22	23.39
CDX96008	Canola	extracellular, vacuole	18.13	23.25
CDX81531	Canola	extracellular, vacuole	18.13	22.9
CDY07378	Canola	extracellular, vacuole	17.95	22.75
CDY44885	Canola	extracellular, vacuole	17.95	22.68
CDX70414	Canola	extracellular, plastid, vacuole	18.13	22.49

Protein Annotations

Gene3D:2.60.40.1180	Gene3D:2.60.40.1760	Gene3D:3.20.20.80	MapMan:50.3.2	GO:A0A078J8W5	UniProt:A0A078J8W5
EnsemblPlants:CDY60313	ProteinID:CDY60313	ProteinID:CDY60313.1	InterPro:DUF5110	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005488	GO:GO:0005575	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0030246	EnsemblPlantsGene:GSBRNA2T00028486001	InterPro:Gal_mutarotase_sf_dom
InterPro:Glyco_hydro_31	InterPro:Glyco_hydro_31_AS	InterPro:Glyco_hydro_31_N_dom	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780
PFAM:PF01055	PFAM:PF13802	PFAM:PF17137	ScanProsite:PS00129	PANTHER:PTHR22762	PANTHER:PTHR22762:SF120
SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF74650	TMHMM:TMhelix	UniParc:UPI0004EE40D8	SEG:seg

Description

BnaCnng35950DBnaCnng35950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J8W5]

Coordinates

chrLK033868:-:3995..12496

Molecular Weight (calculated)

124858.0 Da

IEP (calculated)

5.757

GRAVY (calculated)

-0.167

Length

1114 amino acids

Sequence
(BLAST)

0001: MIVLPLIIIS GFCYLINVYL FKVLRASAVM KECKFLASII LKNRKTAQSS SALTRGNRSS SFFINDRCLP LLNQIAPLLF FHAVRSQSGC FLLDYMGKNI
0101: VKMTISGDNS ETIGIAPTEM IFEPILEDAV FRFDCSVEHR KAAFPSVSFK NIKDREVSVI SHNVPAYTPT CVCLEEKQVV TFEFPPGTSF YGTGEVGGEL
0201: ERTGKRVFTW NTDAWGYGPG TTPLYQSHPW VLVVLPTGET LGVLADTTQK CEIDLRKEGI IRIIAPTSYP IITFGPFSSP TAVLESLSHA IGTVFMPPKW
0301: ALGYHQCRFS YMSEKRVAEI AQTFRDKKIP ADVIWMDIDY MDGFRCFTFD KAFFFLFWII SSIFLPERFP DPSALANYLH NNGFKAVWML DPGIKKEEGY
0401: SVYDSGSKDD VWVKQADGKP FIGEVWPGPC VFPDYTNSKA RSWWASLVQD FISNGVDGIW NDMNEPAVFN TVTKTMPENN IHCGDDELGG VQNHSHYHNV
0501: YGTLMARSTY EGIDLADKNK RPFVLTRAGF IGSQRYAATW TGDNLSTWEH LHMSISMVLQ LGLSGQPLSG PDIGGFGGNA TPRLFGRWMG VGAMFPFCRG
0601: HSEVATDDHE PWSFGGECEE VCRAALKRRY QLLPHFYTLF YIAHTTGAPV AAPIFFADPK DSRLRTVENA FLLGPLLIYA STLNNQGSHE LHHIMPKGTW
0701: LRFDFEDSHP DLPTLYLQGG SIISVAPPHL HVGEFTLSDD LTLLVSLDEN GKAEGLLFED DGDGYGYTKG KFLITNYIAE KHSSIVTVKV SKTEGDWQRP
0801: KRRVHVRLLL GGGAMLDAWG MDGETIQINV PSKHEVSELI TKSNESFKIH MENTKLIPEK EMLPGQKGME LSRVPIELNN GNWKLNIIPW IGGRILSMSH
0901: VPSGVQWLHS RIDINGYEEY SSTEYRSSGC TEEYNIIETD LEHASEEESL ILEGDVGGGL VLQRKITMPS DNPNILRIAS TIEARSVGAG SGGYSRLACL
1001: RVHPTFTLFH PTESFVSFTS IDGSKHEVWP DSGEQIYEGN NLPHGKWMLV DKRLNLQLVN MFDVSQVVKC IVNWDSGTVN MELWSEDRPV SKDETPLEIE
1101: HEYEVKFPII VLQM

Best Arabidopsis Sequence Match ( AT3G23640.3 )
(BLAST)

0001: MERSFVTQAA VSSSSSLTSK ARASSFFFNG RSLPSLNPIS PFLFLPTSRS FALVVKSTLG RNGDKSLLRM TLSGDSSETV EMTSTDMIFE PILEHGVFRF
0101: DCSVDHRKAA FPSVSFKNSK DREVPIVSHI VPAYIPTCGC LQDQQVVTFE FSPGTSFYGT GEVSGQLERT GKRVFTWNTD AWGYGSGTTS LYQSHPWVLV
0201: VLPTGETLGV LADTTRKCEI DLRKEGIIRI ISPASYPIIT FGPFSSPTAV LESLSHAIGT VFMPPKWALG YHQCRWSYMS DKRVAEIAQT FRDKKIPSDV
0301: IWMDIDYMDG FRCFTFDKER FPDPSALAKD LHSNGFKAIW MLDPGIKQEE GYYVYDSGSK NDVWISRADG KPFTGEVWPG PCVFPDYTNS KARSWWANLV
0401: KEFVSNGVDG IWNDMNEPAV FKVVTKTMPE NNIHHGDDEL GGVQNHSHYH NVYGMLMARS TYEGMELADK NKRPFVLTRA GFIGSQRYAA TWTGDNLSNW
0501: EHLHMSISMV LQLGLSGQPL SGPDIGGFAG NATPRLFGRW MGVGAMFPFC RGHSEAGTDD HEPWSFGEEC EEVCRAALKR RYQLLPHFYT LFYIAHTTGA
0601: PVAAPIFFAD PIDSRLRAVE NGFLLGPLLI YASTLSSQGS HELQHILPRG IWHRFDFADS HPDLPTLYLQ GGSIISLAPP HLHVGEFSLS DDLTLLVSLD
0701: ENGKAKGLLF EDDGDGYGYT KGRFLVTHYI AERDSSTVTV KVSKTEGDWQ RPNRRVHVQL LLGGGAMLDA WGMDGEFIHI KVPSESGISE LISTSNERFK
0801: LHMENTKLIP EKEVVPGQKG MELSKEPVEL SSGDWKLNIV PWVGGRILSM THVPSGIQWL HSRIDINGYE EYSGTEYRSA GCTEEYNVIE RDLEHAGEEE
0901: SLILEGDVGG GLVLRRKISI AKDNQRVFRI ASSIEARSVG AGSGGFSRLV CLRVHPTFTL LHPTESFVSF TSIDGSKHEV WPDSGDQIYE GNNLPHGKWM
1001: LVDKSLNLRM VNRFDVSQVF KCIIHWDCGT VNLELWSKER PVSKESPLKI EHEYEVTSFP

Arabidopsis Description

HGL1Heteroglycan glucosidase 1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTS6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.