CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

nucleus 2
vacuole 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	vacuole
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60045	Canola	cytosol, nucleus, vacuole	98.13	98.13
CDY43760	Canola	vacuole	95.01	94.42
CDX84449	Canola	vacuole	94.54	93.95
GSMUA_Achr1P22850_001	Banana	cytosol	68.8	73.99
AT5G63840.2	Thale cress	plasma membrane, vacuole	94.54	63.92
KRH53951	Soybean	cytosol, nucleus, vacuole	72.7	56.48
TraesCS4D01G244900.1	Wheat	cytosol	71.45	55.52
VIT_05s0029g01090.t01	Wine grape	endoplasmic reticulum, vacuole	75.82	54.73
Os03t0216600-01	Rice	plastid	73.01	54.29
KRH63987	Soybean	endoplasmic reticulum	76.13	53.39
PGSC0003DMT400013692	Potato	vacuole	76.29	52.92
Solyc04g049070.2.1	Tomato	plastid	75.04	52.23
TraesCS4B01G244500.1	Wheat	golgi	71.76	50.22
TraesCS4A01G066900.2	Wheat	golgi	71.92	50.22
HORVU4Hr1G067520.2	Barley	plasma membrane, vacuole	71.61	50.16
Zm00001d028227_P007	Maize	vacuole	71.61	50.05
EER95268	Sorghum	vacuole	71.45	49.95
Zm00001d048080_P002	Maize	plasma membrane	70.67	49.51
VIT_16s0039g01030.t01	Wine grape	extracellular, plasma membrane	77.22	41.49
CDY04236	Canola	extracellular, vacuole	29.33	21.68
CDY38593	Canola	extracellular, vacuole	29.17	21.54
CDY07378	Canola	extracellular, vacuole	29.49	21.5
CDX96008	Canola	extracellular, vacuole	28.86	21.29
CDY44885	Canola	extracellular, vacuole	29.17	21.2
CDX81531	Canola	extracellular, vacuole	29.17	21.2
CDX78437	Canola	extracellular, vacuole	28.55	20.52
CDX70414	Canola	extracellular, plastid, vacuole	28.71	20.49
CDY18102	Canola	plastid	31.98	19.19
CDY60313	Canola	golgi, vacuole	31.83	18.31
CDY56225	Canola	plasma membrane, plastid, vacuole	14.82	17.09
CDY71267	Canola	plastid	4.37	9.79

Protein Annotations

MapMan:18.1.1.6.2.1	Gene3D:2.60.40.1180	Gene3D:2.60.40.1760	Gene3D:3.20.20.80	GO:A0A078CWG0	EnsemblPlants:CDX81200
ProteinID:CDX81200	ProteinID:CDX81200.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00134663001	InterPro:Glyco_hydro_31	InterPro:Glyco_hydro_31_AS
InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	PFAM:PF01055	ScanProsite:PS00129	PANTHER:PTHR22762
PANTHER:PTHR22762:SF54	SUPFAM:SSF51011	SUPFAM:SSF51445	UniParc:UPI0004EE3386	:	:

Description

BnaC09g06110D

Coordinates

chrLK031824:+:86350..88893

Molecular Weight (calculated)

72581.5 Da

IEP (calculated)

5.494

GRAVY (calculated)

-0.438

Length

641 amino acids

Sequence
(BLAST)

001: MVSHGGTGKS SGFFWLNAAE MQIDVLAEGW DAESGGGESR IDTLWMSEAG IVDTFFFAGP EPKDVVRQYA SVTGTSAMPQ LFATGYHQCR WNYKDEEDVA
101: QVDSKFDEHD IPYDVLWLDI EHTDGKRYFT WDSALFPNPE EMQKKLDAKG RRMVTIVDPH IKRDDSYFLH KEATEMGYYV KDSSGKDFDG WCWPGSSSYI
201: DMLSPEIREW WGGRFSYKNY VGSTPSLYIW NDMNEPSVFN GPEVTMPRDA LHVGGVEHRE VHNAYGYYFH MATSDGLVMR GEGKDRPFVL SRAIFPGTQR
301: YGAIWTGDNT AEWEHLRVSI PMLLTLGLTG ITFSGADIGG FFGNPEPELL VRWYQVGAYY PFFRGHAHHD TKRREPWLFG ERNTELMRDA IHTRYTLLPY
401: FYTLFREANV TGVPVLRPLW MEFPQDEATF SNDEAFMVGN GLLVQGVYTK GTTHASVYLP GKESWYDLRN GKTYVGGKTH KMDAPEESIP AFQRAGTIIP
501: RKDRFRRSSF QMDNDPYTLV IALNSSQEAD GELYIDDGKS FEFKRGAYIH RRFVFSNGVL TSKNVAPPEA SLSSQCLIDR IILLGHSSGP NSALVEPLNQ
601: KAEIEMGPLR MGGLVASSGT NVLTIRKPGV RVDQDWTIKI L

Best Arabidopsis Sequence Match ( AT5G63840.2 )
(BLAST)

001: MIVFLSVVFW LSSLLPQSKD FHEQGTKMRS LLFVLSLICF CSQTALSWKK EEFRSCDQTP FCKRARSRTP GACSLIVGDV SITDGDLVAK LLPKAPNQGD
101: GDQIKPLILS LSVYKDGIVR LKIDEDHSLN PPKKRFQVPD VVVSEFEEKK IWLQKVATET ISGDTSPSSV VYVSDGYEAV VRHDPFEVYV REKSGDRRRV
201: VSLNSHGLFD FEQLGRKTEG DNWEEKFRTH TDSRPSGPQS ISFDVSFYDS SFVYGIPEHA TSFALKPTKG PGVEESEPYR LFNLDVFEYD HESPFGLYGS
301: IPFMVSHGKS GKTSGFFWLN AAEMQIDVLA NGWDAESGIS LPSSHSRIDT FWMSEAGIVD TFFFVGPEPK DVVKQYASVT GTSAMPQLFA TGYHQCRWNY
401: KDEEDVAQVD SKFDEHDIPY DVLWLDIEHT DGKRYFTWDS VLFPHPEEMQ KKLAAKGRKM VTIVDPHIKR DDSYFLHKEA TQMGYYVKDS SGKDFDGWCW
501: PGSSSYIDML SPEIRKWWGG RFSYKNYVGS TPSLYTWNDM NEPSVFNGPE VTMPRDALHV GGVEHREVHN AYGYYFHMAT SDGLVMREEG KDRPFVLSRA
601: IFPGTQRYGA IWTGDNTAEW EHLRVSIPMI LTLGLTGITF SGADIGGFFG NPEPELLVRW YQVGAYYPFF RGHAHHDTKR REPWLFGERN TELMRDAIHT
701: RYTLLPYFYT LFREANVTGV PVVRPLWMEF PQDEATFSND EAFMVGSGLL VQGVYTKGTT QASVYLPGKE SWYDLRNGKT YVGGKTHKMD APEESIPAFQ
801: KAGTIIPRKD RFRRSSSQMD NDPYTLVVAL NSSQEAEGEL YIDDGKSFEF RRGSYIHRRF VFSKGVLTST NLAPPEARLS SQCLIDRIIL LGHSSGPKSA
901: LVEPLNQKAE IEMGPLRMGG LVASSGTKVL TIRKPGVRVD QDWTVKIL

Arabidopsis Description

RSW3Glycosyl hydrolases family 31 protein [Source:TAIR;Acc:AT5G63840]
SUBAcon: [plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.