Factsheet for TraesCS4B01G244500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 4
plasma membrane 4
golgi 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G067520.2	Barley	plasma membrane, vacuole	97.71	97.81
TraesCS4D01G244900.1	Wheat	cytosol	87.99	97.7
TraesCS4A01G066900.2	Wheat	golgi	97.71	97.49
Os03t0216600-01	Rice	plastid	85.92	91.3
EER95268	Sorghum	vacuole	89.19	89.09
Zm00001d048080_P002	Maize	plasma membrane	88.21	88.31
Zm00001d028227_P007	Maize	vacuole	87.99	87.9
GSMUA_Achr1P22850_001	Banana	cytosol	51.2	78.69
CDX81200	Canola	vacuole	50.22	71.76
CDY60045	Canola	cytosol, nucleus, vacuole	50.11	71.61
CDY43760	Canola	vacuole	49.45	70.23
CDX84449	Canola	vacuole	49.34	70.08
KRH63987	Soybean	endoplasmic reticulum	68.89	69.04
VIT_05s0029g01090.t01	Wine grape	endoplasmic reticulum, vacuole	66.7	68.81
KRH53951	Soybean	cytosol, nucleus, vacuole	61.57	68.36
Solyc04g049070.2.1	Tomato	plastid	68.23	67.86
PGSC0003DMT400013692	Potato	vacuole	68.45	67.86
Bra037754.1-P	Field mustard	vacuole	61.03	66.47
Bra024240.1-P	Field mustard	vacuole	65.07	64.71
AT5G63840.2	Thale cress	plasma membrane, vacuole	65.94	63.71
VIT_16s0039g01030.t01	Wine grape	extracellular, plasma membrane	66.92	51.38
TraesCS2B01G580100.1	Wheat	endoplasmic reticulum	25.55	27.02
TraesCS2B01G580200.1	Wheat	endoplasmic reticulum	25.55	27.02
TraesCS2B01G580300.1	Wheat	extracellular, plastid, vacuole	25.33	26.07
TraesCS7B01G364700.1	Wheat	mitochondrion, plastid, vacuole	25.76	25.43
TraesCS3B01G041700.1	Wheat	unclear	25.98	25.19
TraesCS7B01G035700.1	Wheat	plasma membrane, vacuole	24.13	23.14
TraesCS1B01G251000.1	Wheat	plastid	25.11	22.12
TraesCS3B01G214700.1	Wheat	plastid	15.39	15.56

Protein Annotations

MapMan:18.1.1.6.2.1	Gene3D:2.60.40.1180	Gene3D:2.60.40.1760	Gene3D:3.20.20.80	InterPro:DUF5110	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	GO:GO:0030246	InterPro:Gal_mutarotase_sf_dom	InterPro:Glyco_hydro_31	InterPro:Glyco_hydro_31_AS	InterPro:Glyco_hydro_31_N_dom
InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	PFAM:PF01055	PFAM:PF13802	PFAM:PF17137
ScanProsite:PS00129	PANTHER:PTHR22762	PANTHER:PTHR22762:SF54	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF74650
SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS4B01G244500	EnsemblPlants:TraesCS4B01G244500.1	TIGR:cd06603	TIGR:cd14752	SEG:seg

Description

No Description!

Coordinates

chr4B:-:506144390..506148621

Molecular Weight (calculated)

103014.0 Da

IEP (calculated)

5.828

GRAVY (calculated)

-0.398

Length

916 amino acids

Sequence
(BLAST)

001: MDPPPRPRVL RLALLLLLLA SPAALAWKKD EFRNCNQTPF CKRARTRAPH SLDAPLSLVA GSLAVSPEGS LTAELSHPSR PRPLLLRLSA LPPHALRLQI
101: DEDYSANTPP SRRFHVPDVL LPDVDSRALH LSKPKTVAGV STVALSSDLD VVVKHDPFEL TVRRAGSGDP VLSFNSQGLF DFEPLQELKP EGETWEEQFR
201: SHTDTRPRGP QSITFDVSFY GADFVYGLPE HGSTSLALRP TRGPGVEESE PYRLFNLDVF EYLHESPFGL YGSIPFMIAH GASASSGFFW LNAAEMQIDV
301: LAPGWDGAAS TENGRIDTLW MAEAGVVDAF FFVGSEPKDV IKQYISVTGT PSMPQQFAVA YHQCRWNYRD EEDVAGVDAG FDEHDIPYDV LWLDIEHTDG
401: KRYFTWDRST FPNPEEMQRK IADKGRKMVT IVDPHMKRDS GYHIHEEATA KGYYVKDASG KDYDGWCWPG SSSYPDMLNP EIRDWWADKF SYQNYKGSTP
501: TLYIWNDMNE PSVFNGPEVT MPRDAIHIGD VEHRELHNAY GYYFHMATSD GLLKRGEGKD RPFVLSRAFF AGSQRYGAVW TGDNTADWDH LKSSIPMVLT
601: LGLTGMTFSG ADVGGFFGNP EPDLLVRWYQ VGAFYPFFRG HAHHDTKRRE PWLFGERRTA LMREAIHMRY SLLPYYYTLF QEASVTGVPV MRPLWLEFPD
701: DKETYNNGEA FMVGPSILAQ GIYEEGQKSV LVYLPGTELW YDLRNGSPYK GSVSHKLQVS EDSIPSFQRS GTIVPRKDRF RRSSTQMVND PYTLVIALNS
801: SGSAEGELYV DDGKSYDYQQ GAFIHRRFVF ADNKLTSINI APDSLGKKVY STECVIERII VLGLSSGAKK AIIEPGNQEV EIDLGPISLR SGSKSVVPTV
901: RRPNVRVVDD WTIRIA

Best Arabidopsis Sequence Match ( AT5G63840.2 )
(BLAST)

001: MIVFLSVVFW LSSLLPQSKD FHEQGTKMRS LLFVLSLICF CSQTALSWKK EEFRSCDQTP FCKRARSRTP GACSLIVGDV SITDGDLVAK LLPKAPNQGD
101: GDQIKPLILS LSVYKDGIVR LKIDEDHSLN PPKKRFQVPD VVVSEFEEKK IWLQKVATET ISGDTSPSSV VYVSDGYEAV VRHDPFEVYV REKSGDRRRV
201: VSLNSHGLFD FEQLGRKTEG DNWEEKFRTH TDSRPSGPQS ISFDVSFYDS SFVYGIPEHA TSFALKPTKG PGVEESEPYR LFNLDVFEYD HESPFGLYGS
301: IPFMVSHGKS GKTSGFFWLN AAEMQIDVLA NGWDAESGIS LPSSHSRIDT FWMSEAGIVD TFFFVGPEPK DVVKQYASVT GTSAMPQLFA TGYHQCRWNY
401: KDEEDVAQVD SKFDEHDIPY DVLWLDIEHT DGKRYFTWDS VLFPHPEEMQ KKLAAKGRKM VTIVDPHIKR DDSYFLHKEA TQMGYYVKDS SGKDFDGWCW
501: PGSSSYIDML SPEIRKWWGG RFSYKNYVGS TPSLYTWNDM NEPSVFNGPE VTMPRDALHV GGVEHREVHN AYGYYFHMAT SDGLVMREEG KDRPFVLSRA
601: IFPGTQRYGA IWTGDNTAEW EHLRVSIPMI LTLGLTGITF SGADIGGFFG NPEPELLVRW YQVGAYYPFF RGHAHHDTKR REPWLFGERN TELMRDAIHT
701: RYTLLPYFYT LFREANVTGV PVVRPLWMEF PQDEATFSND EAFMVGSGLL VQGVYTKGTT QASVYLPGKE SWYDLRNGKT YVGGKTHKMD APEESIPAFQ
801: KAGTIIPRKD RFRRSSSQMD NDPYTLVVAL NSSQEAEGEL YIDDGKSFEF RRGSYIHRRF VFSKGVLTST NLAPPEARLS SQCLIDRIIL LGHSSGPKSA
901: LVEPLNQKAE IEMGPLRMGG LVASSGTKVL TIRKPGVRVD QDWTVKIL

Arabidopsis Description

RSW3Glycosyl hydrolases family 31 protein [Source:TAIR;Acc:AT5G63840]
SUBAcon: [plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.