CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

nucleus 2
vacuole 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	vacuole
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84449	Canola	vacuole	98.76	98.76
CDX81200	Canola	vacuole	94.42	95.01
CDY60045	Canola	cytosol, nucleus, vacuole	93.8	94.38
GSMUA_Achr1P22850_001	Banana	cytosol	67.75	73.32
Bra024240.1-P	Field mustard	vacuole	99.22	69.49
AT5G63840.2	Thale cress	plasma membrane, vacuole	96.28	65.51
KRH53951	Soybean	cytosol, nucleus, vacuole	72.71	56.85
TraesCS4D01G244900.1	Wheat	cytosol	69.92	54.67
VIT_05s0029g01090.t01	Wine grape	endoplasmic reticulum, vacuole	75.19	54.62
KRH63987	Soybean	endoplasmic reticulum	76.74	54.16
Os03t0216600-01	Rice	plastid	71.47	53.48
PGSC0003DMT400013692	Potato	vacuole	74.88	52.27
Solyc04g049070.2.1	Tomato	plastid	73.8	51.68
HORVU4Hr1G067520.2	Barley	plasma membrane, vacuole	70.54	49.73
TraesCS4A01G066900.2	Wheat	golgi	70.39	49.46
TraesCS4B01G244500.1	Wheat	golgi	70.23	49.45
Zm00001d028227_P007	Maize	vacuole	70.23	49.4
EER95268	Sorghum	vacuole	70.08	49.29
Zm00001d048080_P002	Maize	plasma membrane	69.61	49.07
VIT_16s0039g01030.t01	Wine grape	extracellular, plasma membrane	76.74	41.49
CDY04236	Canola	extracellular, vacuole	28.22	20.99
CDY07378	Canola	extracellular, vacuole	28.37	20.82
CDY38593	Canola	extracellular, vacuole	27.91	20.74
CDX78437	Canola	extracellular, vacuole	28.53	20.63
CDX96008	Canola	extracellular, vacuole	27.75	20.6
CDY44885	Canola	extracellular, vacuole	28.06	20.52
CDX81531	Canola	extracellular, vacuole	28.06	20.52
CDX70414	Canola	extracellular, plastid, vacuole	28.37	20.38
CDY18102	Canola	plastid	31.63	19.1
CDY60313	Canola	golgi, vacuole	31.47	18.22
CDY56225	Canola	plasma membrane, plastid, vacuole	14.88	17.27
CDY71267	Canola	plastid	4.34	9.79

Protein Annotations

MapMan:18.1.1.6.2.1	Gene3D:2.60.40.1180	Gene3D:2.60.40.1760	Gene3D:3.20.20.80	GO:A0A078HYV0	UniProt:A0A078HYV0
EnsemblPlants:CDY43760	ProteinID:CDY43760	ProteinID:CDY43760.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	EnsemblPlantsGene:GSBRNA2T00077257001
InterPro:Glyco_hydro_31	InterPro:Glyco_hydro_31_AS	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	PFAM:PF01055
ScanProsite:PS00129	PANTHER:PTHR22762	PANTHER:PTHR22762:SF54	SUPFAM:SSF51011	SUPFAM:SSF51445	UniParc:UPI0004EDE25E

Description

BnaA06g22960DBnaA06g22960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HYV0]

Coordinates

chrLK032568:+:11107..14373

Molecular Weight (calculated)

73017.2 Da

IEP (calculated)

6.302

GRAVY (calculated)

-0.420

Length

645 amino acids

Sequence
(BLAST)

001: MVSHGKSGKT SGFFWLNAAE MQIDVLANGW DAESGIALPS SESRIDTLWM SEAGIVDTFF FVGPGPKDVV KQYASVTGTS AMPQLFATGY HQCRWNYKDE
101: EDVAQVDSKF DEHDIPYDVL WLDIEHTDGK RYFTWDSALF PNPEEMQKKL AAKGRRMVTI VDPHIKRDDS YFLHKEATQM GYYVKDSSGK DFDGWCWPGS
201: SSYIDMLSPE IREWWGGRFS YKNYVGSTPS LYIWNDMNEP SVFNGPEVTM PRDALHVGGV EHREVHNAYG YYFHMATSDG LVMREEGKDR PFVLSRAIFP
301: GTQRYGAIWT GDNTAEWEHL RVSIPMLLTL GLTGITFSGA DIGGFFGNPE PELLVRWYQV GAYYPFFRGH AHHDTKRREP WLFGERNTEL MRDAIHTRYT
401: LLPYFYTLFR EANVTGVPVV RPLWMEFPQD EATFSNDEAF MVGNALLVQG VYTKGTTHAS VYLPGKASWY DLRNGKTYVG GKTYKMDAPE ESIPAFQRAG
501: TIIPRKDRFR RSSSQMDNDP YTLVVALNST QEADGELYID DGKSLEFRRG SYIHRRFVFS NGVLTSTNLA PPHARLSSQC SIDRIILLGH TSGPKSALVE
601: PLNQKAEIEM GPLRMGGLVA SSGTKVLTIR KPGVRVDQDW TVKVL

Best Arabidopsis Sequence Match ( AT5G63840.2 )
(BLAST)

001: MIVFLSVVFW LSSLLPQSKD FHEQGTKMRS LLFVLSLICF CSQTALSWKK EEFRSCDQTP FCKRARSRTP GACSLIVGDV SITDGDLVAK LLPKAPNQGD
101: GDQIKPLILS LSVYKDGIVR LKIDEDHSLN PPKKRFQVPD VVVSEFEEKK IWLQKVATET ISGDTSPSSV VYVSDGYEAV VRHDPFEVYV REKSGDRRRV
201: VSLNSHGLFD FEQLGRKTEG DNWEEKFRTH TDSRPSGPQS ISFDVSFYDS SFVYGIPEHA TSFALKPTKG PGVEESEPYR LFNLDVFEYD HESPFGLYGS
301: IPFMVSHGKS GKTSGFFWLN AAEMQIDVLA NGWDAESGIS LPSSHSRIDT FWMSEAGIVD TFFFVGPEPK DVVKQYASVT GTSAMPQLFA TGYHQCRWNY
401: KDEEDVAQVD SKFDEHDIPY DVLWLDIEHT DGKRYFTWDS VLFPHPEEMQ KKLAAKGRKM VTIVDPHIKR DDSYFLHKEA TQMGYYVKDS SGKDFDGWCW
501: PGSSSYIDML SPEIRKWWGG RFSYKNYVGS TPSLYTWNDM NEPSVFNGPE VTMPRDALHV GGVEHREVHN AYGYYFHMAT SDGLVMREEG KDRPFVLSRA
601: IFPGTQRYGA IWTGDNTAEW EHLRVSIPMI LTLGLTGITF SGADIGGFFG NPEPELLVRW YQVGAYYPFF RGHAHHDTKR REPWLFGERN TELMRDAIHT
701: RYTLLPYFYT LFREANVTGV PVVRPLWMEF PQDEATFSND EAFMVGSGLL VQGVYTKGTT QASVYLPGKE SWYDLRNGKT YVGGKTHKMD APEESIPAFQ
801: KAGTIIPRKD RFRRSSSQMD NDPYTLVVAL NSSQEAEGEL YIDDGKSFEF RRGSYIHRRF VFSKGVLTST NLAPPEARLS SQCLIDRIIL LGHSSGPKSA
901: LVEPLNQKAE IEMGPLRMGG LVASSGTKVL TIRKPGVRVD QDWTVKIL

Arabidopsis Description

RSW3Glycosyl hydrolases family 31 protein [Source:TAIR;Acc:AT5G63840]
SUBAcon: [plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.