Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G68560.1 | CDX70151 | AT5G05410.1 | 18552202 |
| AT1G68560.1 | CDX98843 | AT5G05410.1 | 18552202 |
| AT1G68560.1 | CDY04950 | AT5G05410.1 | 18552202 |
| AT1G68560.1 | CDY52149 | AT5G05410.1 | 18552202 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04236 | Canola | extracellular, vacuole | 96.7 | 98.04 |
| Bra004031.1-P | Field mustard | extracellular, vacuole | 99.2 | 94.37 |
| CDY44885 | Canola | extracellular, vacuole | 90.78 | 90.48 |
| CDX81531 | Canola | extracellular, vacuole | 90.56 | 90.25 |
| CDY38593 | Canola | extracellular, vacuole | 88.62 | 89.75 |
| CDX96008 | Canola | extracellular, vacuole | 88.28 | 89.3 |
| AT1G68560.1 | Thale cress | extracellular, vacuole | 87.37 | 83.93 |
| AT3G45940.1 | Thale cress | vacuole | 79.29 | 80.3 |
| KRH75375 | Soybean | endoplasmic reticulum | 73.83 | 69.94 |
| KRH45278 | Soybean | endoplasmic reticulum | 73.38 | 69.65 |
| KRH35960 | Soybean | endoplasmic reticulum | 73.27 | 69.62 |
| VIT_01s0011g03450.t01 | Wine grape | extracellular | 72.7 | 69.16 |
| GSMUA_Achr1P20950_001 | Banana | golgi, vacuole | 61.21 | 68.02 |
| PGSC0003DMT400037696 | Potato | extracellular | 71.56 | 67.78 |
| Solyc05g009470.2.1 | Tomato | extracellular | 71.1 | 67.35 |
| PGSC0003DMT400041054 | Potato | endoplasmic reticulum, extracellular, vacuole | 70.99 | 67.1 |
| Solyc04g007150.2.1 | Tomato | extracellular | 44.71 | 65.61 |
| EES02554 | Sorghum | extracellular, vacuole | 66.44 | 62.93 |
| Zm00001d039994_P001 | Maize | extracellular | 65.76 | 62.35 |
| Os01t0130400-01 | Rice | extracellular | 65.42 | 61.7 |
| Solyc04g007160.1.1 | Tomato | extracellular | 18.77 | 61.34 |
| TraesCS3B01G041700.1 | Wheat | unclear | 64.05 | 59.58 |
| TraesCS3D01G038300.1 | Wheat | golgi | 64.16 | 59.49 |
| TraesCS3A01G042100.1 | Wheat | nucleus | 64.05 | 59.33 |
| HORVU3Hr1G003540.2 | Barley | extracellular, vacuole | 63.94 | 58.91 |
| HORVU2Hr1G062940.1 | Barley | extracellular, plastid, vacuole | 6.71 | 55.66 |
| CDX78437 | Canola | extracellular, vacuole | 45.28 | 44.62 |
| CDX70414 | Canola | extracellular, plastid, vacuole | 45.05 | 44.1 |
| CDX81200 | Canola | vacuole | 21.5 | 29.49 |
| CDY60045 | Canola | cytosol, nucleus, vacuole | 21.16 | 29.02 |
| CDX84449 | Canola | vacuole | 20.93 | 28.53 |
| CDY43760 | Canola | vacuole | 20.82 | 28.37 |
| CDY18102 | Canola | plastid | 22.64 | 18.63 |
| CDY60313 | Canola | golgi, vacuole | 22.75 | 17.95 |
| CDY71267 | Canola | plastid | 4.78 | 14.69 |
| CDY56225 | Canola | plasma membrane, plastid, vacuole | 9.22 | 14.57 |
Protein Annotations
| Gene3D:2.60.40.1180 | Gene3D:2.60.40.1760 | MapMan:21.2.1.2.5 | Gene3D:3.20.20.80 | GO:A0A078F6U7 | UniProt:A0A078F6U7 |
| EnsemblPlants:CDY07378 | ProteinID:CDY07378 | ProteinID:CDY07378.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 |
| GO:GO:0005488 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | GO:GO:0016798 |
| GO:GO:0030246 | EnsemblPlantsGene:GSBRNA2T00124356001 | InterPro:Gal_mutarotase_N | InterPro:Gal_mutarotase_sf_dom | InterPro:Glyco_hydro_31 | InterPro:Glyco_hydro_31_AS |
| InterPro:Glyco_hydro_31_N_dom | InterPro:Glyco_hydro_b | InterPro:Glycoside_hydrolase_SF | InterPro:IPR013780 | PFAM:PF01055 | PFAM:PF13802 |
| PFAM:PF16863 | ScanProsite:PS00129 | PANTHER:PTHR22762 | PANTHER:PTHR22762:SF125 | SUPFAM:SSF51011 | SUPFAM:SSF51445 |
| SUPFAM:SSF74650 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EF303B | SEG:seg | : |
Description
BnaA07g24570DBnaA07g24570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F6U7]
Coordinates
chrLK031978:+:319619..323751
Molecular Weight (calculated)
98132.6 Da
IEP (calculated)
8.478
GRAVY (calculated)
-0.203
Length
879 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPKTAVSS LSLLVALIIC FSPVHSSNTI GKGYRLISVE ESPDGGFIGY LQVKQKTNIY GSDITTLRLF VKHETDNRLR VHITDAKKQR WEVPYNLLPR
101: EQPPPAGKVI GKYPTTVHEI SGSELIFSFT KDPFTFAVKR RSNGQTLFNT SSDSTSPFGQ MVFKDQYLEI STSLPKDASL YGLGENSQAK GIKLVPNEPY
201: TLYTEDVSAI NLNTDLYGSH PVYMDLRNVG GKPYAHAVLL LNSNGMDVFY RGTSLTYKVT GGVFDFYFVA GPSPLDVVDQ YTSLIGRPAP MPYWSLGFHQ
301: CRWGYHNLSV VEDVVDSYKK AKIPLDVIWN DDDHMDAHKD FTLNNISYPR AKLLKFLDRI HKMGMKYIVI NDPGIGVNAS YGVYQRAMAN DVFIKYEGKP
401: FLAQVWPGPV YFPDFLNPKT VAWWGDEIRR FHELVPIDGL WIDMNEINAT GVTAPVGFKT IATSALHYNG VREYDAHSLY GFSETIATHK GLQSIEGKRP
501: FILSRSTFVG SGRYAAHWTG DNKGTWQSLR VSISTMLNFG IFGVPMVGSD ICGFYPQPTE ELCNRWIEVG AFYPFSRDHA NYYSPRQELY QWDTVAKSAR
601: NALGMRYKLL PYLYTLSYEA HMTGAPMARP LFFSFPEYTK CYGLSTQFLL GTSLMISPVL KKGRTQVKAL FPPGSWYHMF DMTQAVVTKT GKRVALPAPL
701: HFVNVHLYQN TILPMQQGGL ISKEARTTPF SLVITFPAGA TEGYATGKLY LDEDELPEMK LGNGQSTYVD FYASVGNGTV KMWSQVKEGK FALSKGWVIE
801: KVSVLGLKGA GSASEIEING SPISNEAKKI EVSSKEHTYV AGLEEEGENK SVMVEVKGLE MMVGKDFNMS WKMGINGAV
101: EQPPPAGKVI GKYPTTVHEI SGSELIFSFT KDPFTFAVKR RSNGQTLFNT SSDSTSPFGQ MVFKDQYLEI STSLPKDASL YGLGENSQAK GIKLVPNEPY
201: TLYTEDVSAI NLNTDLYGSH PVYMDLRNVG GKPYAHAVLL LNSNGMDVFY RGTSLTYKVT GGVFDFYFVA GPSPLDVVDQ YTSLIGRPAP MPYWSLGFHQ
301: CRWGYHNLSV VEDVVDSYKK AKIPLDVIWN DDDHMDAHKD FTLNNISYPR AKLLKFLDRI HKMGMKYIVI NDPGIGVNAS YGVYQRAMAN DVFIKYEGKP
401: FLAQVWPGPV YFPDFLNPKT VAWWGDEIRR FHELVPIDGL WIDMNEINAT GVTAPVGFKT IATSALHYNG VREYDAHSLY GFSETIATHK GLQSIEGKRP
501: FILSRSTFVG SGRYAAHWTG DNKGTWQSLR VSISTMLNFG IFGVPMVGSD ICGFYPQPTE ELCNRWIEVG AFYPFSRDHA NYYSPRQELY QWDTVAKSAR
601: NALGMRYKLL PYLYTLSYEA HMTGAPMARP LFFSFPEYTK CYGLSTQFLL GTSLMISPVL KKGRTQVKAL FPPGSWYHMF DMTQAVVTKT GKRVALPAPL
701: HFVNVHLYQN TILPMQQGGL ISKEARTTPF SLVITFPAGA TEGYATGKLY LDEDELPEMK LGNGQSTYVD FYASVGNGTV KMWSQVKEGK FALSKGWVIE
801: KVSVLGLKGA GSASEIEING SPISNEAKKI EVSSKEHTYV AGLEEEGENK SVMVEVKGLE MMVGKDFNMS WKMGINGAV
001: MASSSSSLAF SLSLLLALIL CFSPTQSYKT IGKGYRLVSI EESPDGGFIG YLQVKQKNKI YGSDITTLRL FVKHETDSRL RVHITDAKQQ RWEVPYNLLP
101: REQPPQVGKV IGKSRKSPIT VQEISGSELI FSYTTDPFTF AVKRRSNHET LFNTTSSLVF KDQYLEISTS LPKEASLYGL GENSQANGIK LVPNEPYTLY
201: TEDVSAINLN TDLYGSHPMY MDLRNVGGKA YAHAVLLLNS NGMDVFYRGD SLTYKVIGGV FDFYFIAGPS PLNVVDQYTQ LIGRPAPMPY WSLGFHQCRW
301: GYHNLSVVED VVDNYKKAKI PLDVIWNDDD HMDGHKDFTL NPVAYPRAKL LAFLDKIHKI GMKYIVINDP GIGVNASYGT FQRAMAADVF IKYEGKPFLA
401: QVWPGPVYFP DFLNPKTVSW WGDEIKRFHD LVPIDGLWID MNEVSNFCSG LCTIPEGKQC PSGEGPGWVC CLDCKNITKT RWDDPPYKIN ATGVVAPVGF
501: KTIATSATHY NGVREYDAHS IYGFSETIAT HKGLLNVQGK RPFILSRSTF VGSGQYAAHW TGDNQGTWQS LQVSISTMLN FGIFGVPMVG SDICGFYPQP
601: TEELCNRWIE VGAFYPFSRD HANYYSPRQE LYQWDTVADS ARNALGMRYK ILPFLYTLNY EAHMTGAPIA RPLFFSFPEY TECYGNSRQF LLGSSFMISP
701: VLEQGKTEVE ALFPPGSWYH MFDMTQAVVS KNGKRVTLPA PLNFVNVHLY QNTILPTQQG GLISKDARTT PFSLVIAFPA GASEGYATGK LYLDEDELPE
801: MKLGNGQSTY VDFYASVGNG TMKMWSQVKE GKFALSKGWV IEKVSVLGLR GAGQVSEIQI NGSPMTKKIE VSSKEHTYVI GLEDEEENKS VMVEVRGLEM
901: LVGKDFNMSW KMGIN
101: REQPPQVGKV IGKSRKSPIT VQEISGSELI FSYTTDPFTF AVKRRSNHET LFNTTSSLVF KDQYLEISTS LPKEASLYGL GENSQANGIK LVPNEPYTLY
201: TEDVSAINLN TDLYGSHPMY MDLRNVGGKA YAHAVLLLNS NGMDVFYRGD SLTYKVIGGV FDFYFIAGPS PLNVVDQYTQ LIGRPAPMPY WSLGFHQCRW
301: GYHNLSVVED VVDNYKKAKI PLDVIWNDDD HMDGHKDFTL NPVAYPRAKL LAFLDKIHKI GMKYIVINDP GIGVNASYGT FQRAMAADVF IKYEGKPFLA
401: QVWPGPVYFP DFLNPKTVSW WGDEIKRFHD LVPIDGLWID MNEVSNFCSG LCTIPEGKQC PSGEGPGWVC CLDCKNITKT RWDDPPYKIN ATGVVAPVGF
501: KTIATSATHY NGVREYDAHS IYGFSETIAT HKGLLNVQGK RPFILSRSTF VGSGQYAAHW TGDNQGTWQS LQVSISTMLN FGIFGVPMVG SDICGFYPQP
601: TEELCNRWIE VGAFYPFSRD HANYYSPRQE LYQWDTVADS ARNALGMRYK ILPFLYTLNY EAHMTGAPIA RPLFFSFPEY TECYGNSRQF LLGSSFMISP
701: VLEQGKTEVE ALFPPGSWYH MFDMTQAVVS KNGKRVTLPA PLNFVNVHLY QNTILPTQQG GLISKDARTT PFSLVIAFPA GASEGYATGK LYLDEDELPE
801: MKLGNGQSTY VDFYASVGNG TMKMWSQVKE GKFALSKGWV IEKVSVLGLR GAGQVSEIQI NGSPMTKKIE VSSKEHTYVI GLEDEEENKS VMVEVRGLEM
901: LVGKDFNMSW KMGIN
Arabidopsis Description
XYL1Alpha-xylosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y7]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.