CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75375	Soybean	endoplasmic reticulum	81.84	81.57
KRH45278	Soybean	endoplasmic reticulum	81.3	81.21
VIT_01s0011g03450.t01	Wine grape	extracellular	75.46	75.54
Solyc04g007150.2.1	Tomato	extracellular	48.54	74.96
PGSC0003DMT400041054	Potato	endoplasmic reticulum, extracellular, vacuole	75.14	74.73
Bra004031.1-P	Field mustard	extracellular, vacuole	73.95	74.03
AT1G68560.1	Thale cress	extracellular, vacuole	72.97	73.77
Bra004319.1-P	Field mustard	extracellular, vacuole	73.84	73.76
CDY38593	Canola	extracellular, vacuole	68.97	73.5
CDX96008	Canola	extracellular, vacuole	68.86	73.3
CDY07378	Canola	extracellular, vacuole	69.62	73.27
Bra035407.1-P	Field mustard	extracellular, vacuole	73.3	73.14
CDX81531	Canola	extracellular, vacuole	69.73	73.13
CDY04236	Canola	extracellular, vacuole	68.54	73.13
CDY44885	Canola	extracellular, vacuole	69.62	73.02
PGSC0003DMT400037696	Potato	extracellular	72.43	72.2
Solyc05g009470.2.1	Tomato	extracellular	71.89	71.66
GSMUA_Achr1P20950_001	Banana	golgi, vacuole	60.32	70.54
AT3G45940.1	Thale cress	vacuole	65.73	70.05
EES02554	Sorghum	extracellular, vacuole	67.24	67.03
Zm00001d039994_P001	Maize	extracellular	66.92	66.77
Os01t0130400-01	Rice	extracellular	65.95	65.45
Solyc04g007160.1.1	Tomato	extracellular	18.92	65.06
TraesCS3D01G038300.1	Wheat	golgi	65.73	64.14
TraesCS3B01G041700.1	Wheat	unclear	64.97	63.6
TraesCS3A01G042100.1	Wheat	nucleus	65.19	63.54
HORVU3Hr1G003540.2	Barley	extracellular, vacuole	65.41	63.42
HORVU2Hr1G062940.1	Barley	extracellular, plastid, vacuole	6.7	58.49
KRH11838	Soybean	vacuole	33.95	48.83
KRH11840	Soybean	cytosol, nucleus	23.68	46.4
KRH36850	Soybean	nucleus	44.86	46.27
KRH11839	Soybean	extracellular	44.76	44.18
KRH53951	Soybean	cytosol, nucleus, vacuole	21.41	24.0
KRH63987	Soybean	endoplasmic reticulum	23.35	23.63
KRH62685	Soybean	nucleus	23.14	20.32
KRH66765	Soybean	plastid	15.03	15.83

Protein Annotations

EntrezGene:100816950	Gene3D:2.60.40.1180	Gene3D:2.60.40.1760	MapMan:21.2.1.2.5	Gene3D:3.20.20.80	EMBL:ACUP02006715
EnsemblPlantsGene:GLYMA_10G274700	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005488	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	GO:GO:0030246	InterPro:Gal_mutarotase_N
InterPro:Gal_mutarotase_sf_dom	InterPro:Glyco_hydro_31	InterPro:Glyco_hydro_31_AS	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	UniProt:I1LEX2
InterPro:IPR013780	EnsemblPlants:KRH35960	ProteinID:KRH35960	ProteinID:KRH35960.1	PFAM:PF01055	PFAM:PF16863
ScanProsite:PS00129	PANTHER:PTHR22762	PANTHER:PTHR22762:SF125	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF74650
SignalP:SignalP-noTM	UniParc:UPI000233D240	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:49769827..49774045

Molecular Weight (calculated)

103642.0 Da

IEP (calculated)

6.405

GRAVY (calculated)

-0.179

Length

925 amino acids

Sequence
(BLAST)

001: MASSIRLVTL CLSYLLLTWL LHVTAEEATS SSNKIGLGYR LISIKDAPDG SLVGLLQVKQ NNNVYGPDLP LLRFYVKHET ENRLRVHITD AKKQRWEVPY
101: NLLPREQPPA LNQYIVWSRK KNLVSVSEYS GSGSDLVFSY ISDPFSFSVK RKSNGDTLFD SNSNEFNSLV FKDQYLEIST KLPKDASLYG LGENTQPHGI
201: KLYPNDPSTL YTTDVSAINL NTDLYGSHPV YMDLRNEGGK PYAHGVLLLN SNGMDVFYRG TSLTYKIIGG VLDFYFFAGP TPLNVVDQYT SLIGRPAPMP
301: YWAFGFHQCR WGYHNLSVVE DVVENYKKAK IPLDVIWNDD DHMDGHKDFT LNPVNYPHSK LLDFLDRIHS IGMKYIVIID PGIAVNSSYG VYQRGIADDV
401: FIKYEGEPFL AQVWPGAVYF PDFLNPKTVS WWVDEIRRFH ELVPVDGLWI DMNEASNFCS GKCTIPKGKV CPSGTGPGWI CCLDCKNITS TRWDDPPYKI
501: NASGVQAPIG FKTIATSAVH YDGVLEYDAH SIYGFSQAIA THKALQGLKG KRPFILSRST YVGSGKYAAH WTGDNKGTWE DLRYSISTML NFGIFGVPMV
601: GSDICGFYPA PTEELCNRWI EVGAFYPFSR DHANFYSPRQ ELYQWESVAE SARNALGMRY KLLPYLYTLN YEAHVSGAPI ARPLFFSFPT YTECYGLSTQ
701: FLLGSSLMIS PVLEQGKTQV TALFLPGTWY NLFDLTQTIV SKDGNYVTLD APLHVVNVHL YQNSILPMQQ GGMISKDARM TPFSLIVTFP AGATDGEAKG
801: NLFLDDDELP EMKLVNGYST YIDFHATIKE GTVKIWSEVQ EGKFALDKGW VIDTINVLGL NRNGALPKIE IDGEPLMSLS NVQVSTTQHK YLYGQGDGDK
901: ILMVGLKGLN IPVGKNFNVT WKMGS

Best Arabidopsis Sequence Match ( AT1G68560.1 )
(BLAST)

001: MASSSSSLAF SLSLLLALIL CFSPTQSYKT IGKGYRLVSI EESPDGGFIG YLQVKQKNKI YGSDITTLRL FVKHETDSRL RVHITDAKQQ RWEVPYNLLP
101: REQPPQVGKV IGKSRKSPIT VQEISGSELI FSYTTDPFTF AVKRRSNHET LFNTTSSLVF KDQYLEISTS LPKEASLYGL GENSQANGIK LVPNEPYTLY
201: TEDVSAINLN TDLYGSHPMY MDLRNVGGKA YAHAVLLLNS NGMDVFYRGD SLTYKVIGGV FDFYFIAGPS PLNVVDQYTQ LIGRPAPMPY WSLGFHQCRW
301: GYHNLSVVED VVDNYKKAKI PLDVIWNDDD HMDGHKDFTL NPVAYPRAKL LAFLDKIHKI GMKYIVINDP GIGVNASYGT FQRAMAADVF IKYEGKPFLA
401: QVWPGPVYFP DFLNPKTVSW WGDEIKRFHD LVPIDGLWID MNEVSNFCSG LCTIPEGKQC PSGEGPGWVC CLDCKNITKT RWDDPPYKIN ATGVVAPVGF
501: KTIATSATHY NGVREYDAHS IYGFSETIAT HKGLLNVQGK RPFILSRSTF VGSGQYAAHW TGDNQGTWQS LQVSISTMLN FGIFGVPMVG SDICGFYPQP
601: TEELCNRWIE VGAFYPFSRD HANYYSPRQE LYQWDTVADS ARNALGMRYK ILPFLYTLNY EAHMTGAPIA RPLFFSFPEY TECYGNSRQF LLGSSFMISP
701: VLEQGKTEVE ALFPPGSWYH MFDMTQAVVS KNGKRVTLPA PLNFVNVHLY QNTILPTQQG GLISKDARTT PFSLVIAFPA GASEGYATGK LYLDEDELPE
801: MKLGNGQSTY VDFYASVGNG TMKMWSQVKE GKFALSKGWV IEKVSVLGLR GAGQVSEIQI NGSPMTKKIE VSSKEHTYVI GLEDEEENKS VMVEVRGLEM
901: LVGKDFNMSW KMGIN

Arabidopsis Description

XYL1Alpha-xylosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y7]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.