Factsheet for Bra035407.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005852.1-P
Bra009112.1-P
Bra028759.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68560.1	Bra005852.1-P	AT5G05410.1	18552202
AT1G68560.1	Bra009112.1-P	AT5G05410.1	18552202
AT1G68560.1	Bra028759.1-P	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44885	Canola	extracellular, vacuole	94.5	99.32
Bra004319.1-P	Field mustard	extracellular, vacuole	94.61	94.71
Bra004031.1-P	Field mustard	extracellular, vacuole	90.08	90.37
AT1G68560.1	Thale cress	extracellular, vacuole	88.03	89.18
AT3G45940.1	Thale cress	vacuole	75.84	80.99
KRH75375	Soybean	endoplasmic reticulum	74.76	74.68
KRH45278	Soybean	endoplasmic reticulum	73.89	73.97
KRH35960	Soybean	endoplasmic reticulum	73.14	73.3
Solyc04g007150.2.1	Tomato	extracellular	47.03	72.79
VIT_01s0011g03450.t01	Wine grape	extracellular	72.28	72.51
PGSC0003DMT400041054	Potato	endoplasmic reticulum, extracellular, vacuole	72.38	72.15
PGSC0003DMT400037696	Potato	extracellular	71.95	71.88
Solyc05g009470.2.1	Tomato	extracellular	71.74	71.66
GSMUA_Achr1P20950_001	Banana	golgi, vacuole	57.71	67.64
EES02554	Sorghum	extracellular, vacuole	65.05	64.98
Zm00001d039994_P001	Maize	extracellular	64.29	64.29
Os01t0130400-01	Rice	extracellular	64.4	64.06
TraesCS3D01G038300.1	Wheat	golgi	63.65	62.24
TraesCS3A01G042100.1	Wheat	nucleus	63.32	61.85
TraesCS3B01G041700.1	Wheat	unclear	63.0	61.8
HORVU3Hr1G003540.2	Barley	extracellular, vacuole	63.54	61.74
Solyc04g007160.1.1	Tomato	extracellular	17.8	61.34
HORVU2Hr1G062940.1	Barley	extracellular, plastid, vacuole	6.36	55.66
Bra006111.1-P	Field mustard	extracellular, vacuole	44.44	46.24
Bra037754.1-P	Field mustard	vacuole	22.87	25.21
Bra024240.1-P	Field mustard	vacuole	24.49	24.65
Bra028332.1-P	Field mustard	cytosol, nucleus, peroxisome	21.36	20.02
Bra028330.1-P	Field mustard	cytosol	16.83	17.37

Protein Annotations

Gene3D:2.60.40.1180	Gene3D:2.60.40.1760	MapMan:21.2.1.2.5	Gene3D:3.20.20.80	EnsemblPlantsGene:Bra035407	EnsemblPlants:Bra035407.1
EnsemblPlants:Bra035407.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005488	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	GO:GO:0030246	InterPro:Gal_mutarotase_N
InterPro:Gal_mutarotase_sf_dom	InterPro:Glyco_hydro_31	InterPro:Glyco_hydro_31_AS	InterPro:Glyco_hydro_31_CS	InterPro:Glyco_hydro_31_N_dom	InterPro:Glyco_hydro_b
InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	UniProt:M4F2V7	PFAM:PF01055	PFAM:PF13802	PFAM:PF16863
ScanProsite:PS00129	ScanProsite:PS00707	PANTHER:PTHR22762	PANTHER:PTHR22762:SF125	SUPFAM:SSF51011	SUPFAM:SSF51445
SUPFAM:SSF74650	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002544AB4	:	:

Description

AT1G68560 (E=0.0) ATXYL1, XYL1 | XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase

Coordinates

chrA01:+:16632443..16636210

Molecular Weight (calculated)

103268.0 Da

IEP (calculated)

7.184

GRAVY (calculated)

-0.248

Length

927 amino acids

Sequence
(BLAST)

001: MDSPKTVFSC LSLLVALILC FSPTHSSNTI GKGYRLISIE ESPDGGFIGY LQVKHKNKIY GSDITTLRLY VKHETDNRLR VHITDAKKQR WEVPYNLLPR
101: DQPPPVGKAI GKSRKTPITV QEISGSELTF SYTTDPFSFA VKRRSNGQTL FNTSSSPNSG FGEMVFKDQY LEISTSLPKD ASLYGLGENS QANGIKLVPN
201: EPYTLYTEDV SAINLNTDLY GSHPVYMDLR NVGGKPYAHA VLLLNSNGMD VFYRGTSLTY KVIGGVFDFY FVAGPSPLDV VDQYTSLIGR PAPMPYWSLG
301: FHQCRWGYRN LSVIEDVVDS YQKAKIPLDV IWNDDDHMDA KKDFTLSPIS YPRAKLLNFL DKIHKMGMKY VVINDPGIGV NSSYGVYQRG MANDVFIKYE
401: GKPFLAQVWP GAVHFPDFLN PKTVAWWGEE IRRFHELVPI DGLWIDMNEV SNFCTGLCTI PKGKKCPTGE GPGWICCLDC KNITKTRWDE PPYKINATGV
501: QAPIGFKTIA TSALHYNGVR EYDAHSIYGF SETGSTHKGL LSIEGKRPFI LSRSTFVGSG KYAAHWTGDN QGTWQSLQVS ISTMLNFGIF GVPMVGADIC
601: GFYPQPTEEL CNRWIEVGAF YPFSRDHANY YSPRQELYQW DTVANSARNA LGMRYKILPY LYTLNYEAHM TGAPIARPLF FSFPEYTECY ASSRQFLLGS
701: SLMISPVLEQ GKTEVEALFP PGSWYHMFDM TQAVVSKSGK RVTLPAPLNF VNVHLHQNTI LPMQQGGLIS KEARTTPFNL VITFPAGASE GYATGKLYLD
801: EDELPEMKLG NGQSTYVDFY ASVGNGTVKM WSQVKEGKFA LSKGWVIEKV SVLGLRGGGQ ASEVEINGSP VANEGKKIEV SSKEHTYVVG LEEEGENKSV
901: MVEVKGLEIL VGKDFNMSWK MGISGAN

Best Arabidopsis Sequence Match ( AT1G68560.1 )
(BLAST)

001: MASSSSSLAF SLSLLLALIL CFSPTQSYKT IGKGYRLVSI EESPDGGFIG YLQVKQKNKI YGSDITTLRL FVKHETDSRL RVHITDAKQQ RWEVPYNLLP
101: REQPPQVGKV IGKSRKSPIT VQEISGSELI FSYTTDPFTF AVKRRSNHET LFNTTSSLVF KDQYLEISTS LPKEASLYGL GENSQANGIK LVPNEPYTLY
201: TEDVSAINLN TDLYGSHPMY MDLRNVGGKA YAHAVLLLNS NGMDVFYRGD SLTYKVIGGV FDFYFIAGPS PLNVVDQYTQ LIGRPAPMPY WSLGFHQCRW
301: GYHNLSVVED VVDNYKKAKI PLDVIWNDDD HMDGHKDFTL NPVAYPRAKL LAFLDKIHKI GMKYIVINDP GIGVNASYGT FQRAMAADVF IKYEGKPFLA
401: QVWPGPVYFP DFLNPKTVSW WGDEIKRFHD LVPIDGLWID MNEVSNFCSG LCTIPEGKQC PSGEGPGWVC CLDCKNITKT RWDDPPYKIN ATGVVAPVGF
501: KTIATSATHY NGVREYDAHS IYGFSETIAT HKGLLNVQGK RPFILSRSTF VGSGQYAAHW TGDNQGTWQS LQVSISTMLN FGIFGVPMVG SDICGFYPQP
601: TEELCNRWIE VGAFYPFSRD HANYYSPRQE LYQWDTVADS ARNALGMRYK ILPFLYTLNY EAHMTGAPIA RPLFFSFPEY TECYGNSRQF LLGSSFMISP
701: VLEQGKTEVE ALFPPGSWYH MFDMTQAVVS KNGKRVTLPA PLNFVNVHLY QNTILPTQQG GLISKDARTT PFSLVIAFPA GASEGYATGK LYLDEDELPE
801: MKLGNGQSTY VDFYASVGNG TMKMWSQVKE GKFALSKGWV IEKVSVLGLR GAGQVSEIQI NGSPMTKKIE VSSKEHTYVI GLEDEEENKS VMVEVRGLEM
901: LVGKDFNMSW KMGIN

Arabidopsis Description

XYL1Alpha-xylosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y7]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.