Factsheet for Bra005852.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001106.1-P
Bra004031.1-P
Bra004319.1-P
Bra006198.1-P
Bra006199.1-P
Bra007910.1-P
Bra008830.1-P
Bra010432.1-P
Bra012269.1-P
Bra012861.1-P
Bra015525.1-P
Bra015526.1-P
Bra016225.1-P
Bra017318.1-P
Bra017341.1-P
Bra018009.1-P
Bra018304.1-P
Bra021651.1-P
Bra022807.1-P
Bra023208.1-P
Bra023252.1-P
Bra023411.1-P
Bra023412.1-P
Bra025174.1-P
Bra025792.1-P
Bra026309.1-P
Bra026415.1-P
Bra027227.1-P
Bra030947.1-P
Bra033802.1-P
Bra035407.1-P
Bra035511.1-P
Bra036824.1-P
Bra039666.1-P
Bra040142.1-P
Bra040191.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G05410.1	Bra015525.1-P	AT1G06770.1	18552202
AT5G05410.1	Bra015526.1-P	AT1G06770.1	18552202
AT5G05410.1	Bra025792.1-P	AT1G20100.1	18552202
AT5G05410.1	Bra012269.1-P	AT1G21130.1	18552202
AT5G05410.1	Bra023208.1-P	AT1G31817.1	18552202
AT5G05410.1	Bra023252.1-P	AT1G32230.1	19548978
AT5G05410.1	Bra035511.1-P	AT1G32230.1	19548978
AT5G05410.1	Bra030947.1-P	AT1G53280.1	18552202
AT5G05410.1	Bra039666.1-P	AT1G53280.1	18552202
AT5G05410.1	Bra004031.1-P	AT1G68560.1	18552202
AT5G05410.1	Bra004319.1-P	AT1G68560.1	18552202
AT5G05410.1	Bra035407.1-P	AT1G68560.1	18552202
AT5G05410.1	Bra007910.1-P	AT1G70300.1	18552202
AT5G05410.1	Bra016225.1-P	AT1G70300.1	18552202
AT5G05410.1	Bra018304.1-P	AT2G30580.1	18552202
AT5G05410.1	Bra021651.1-P	AT2G30580.1	18552202
AT5G05410.1	Bra022807.1-P	AT2G30580.1	18552202
AT5G05410.1	Bra017318.1-P	AT2G35500.1	18552202
AT5G05410.1	Bra040142.1-P	AT3G04260.1	18552202
AT5G05410.1	Bra001106.1-P	AT3G04480.1	18552202
AT5G05410.1	Bra040191.1-P	AT3G04480.1	18552202
AT5G05410.1	Bra027227.1-P	AT3G15580.1	18552202
AT5G05410.1	Bra017341.1-P	AT3G25920.1	18552202
AT5G05410.1	Bra025174.1-P	AT3G25920.1	18552202
AT5G05410.1	Bra033802.1-P	AT3G46780.1	18552202
AT5G05410.1	Bra018009.1-P	AT3G49080.1	18552202
AT5G05410.1	Bra012861.1-P	AT3G51260.1	18552202
AT5G05410.1	Bra036824.1-P	AT3G51260.1	18552202
AT5G05410.1	Bra010432.1-P	AT4G26630.1	18552202
AT5G05410.1	Bra026415.1-P	AT4G26630.1	18552202
AT5G05410.1	Bra026309.1-P	AT4G27750.1	18552202
AT5G05410.1	Bra006198.1-P	AT5G13430.1	18552202
AT5G05410.1	Bra006199.1-P	AT5G13430.1	18552202
AT5G05410.1	Bra008830.1-P	AT5G13430.1	18552202
AT5G05410.1	Bra023411.1-P	AT5G13430.1	18552202
AT5G05410.1	Bra023412.1-P	AT5G13430.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52149	Canola	nucleus	97.56	97.56
Bra028759.1-P	Field mustard	nucleus	74.39	80.0
AT5G05410.1	Thale cress	nucleus	69.51	68.06
Bra009112.1-P	Field mustard	nucleus	67.38	66.97
Bra034159.1-P	Field mustard	nucleus	48.48	54.83
Bra029889.1-P	Field mustard	nucleus	47.87	50.0
Bra001386.1-P	Field mustard	nucleus	51.83	44.27
Bra008200.1-P	Field mustard	nucleus	19.51	32.32
Bra015840.1-P	Field mustard	nucleus, plastid	20.12	32.04
Bra003752.1-P	Field mustard	nucleus	19.82	31.86
Bra017011.1-P	Field mustard	nucleus	32.32	31.55
Bra005113.1-P	Field mustard	nucleus	23.48	31.17
KXG21735	Sorghum	nucleus	31.4	30.65
HORVU6Hr1G050500.2	Barley	nucleus	27.13	29.67
HORVU6Hr1G050520.2	Barley	nucleus	20.12	27.85
Bra007341.1-P	Field mustard	nucleus	22.56	27.41
Zm00001d010048_P004	Maize	nucleus	30.49	27.25
TraesCS1D01G223600.2	Wheat	nucleus	31.71	26.6
TraesCS1B01G235100.2	Wheat	nucleus	31.4	26.55
Bra023674.1-P	Field mustard	nucleus	22.87	26.04
Bra006460.1-P	Field mustard	nucleus	22.87	25.77
Bra014617.1-P	Field mustard	nucleus	20.12	25.48
TraesCS1A01G221900.1	Wheat	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	31.4	25.31
Bra002159.1-P	Field mustard	nucleus	21.95	23.53
HORVU1Hr1G060490.5	Barley	plasma membrane	32.32	23.45
Bra004978.1-P	Field mustard	nucleus	18.6	19.24
Bra000178.1-P	Field mustard	nucleus	17.07	16.67

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra005852	EnsemblPlants:Bra005852.1
EnsemblPlants:Bra005852.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M4CNR4	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31241	PANTHER:PTHR31241:SF2	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000253FC6D	SEG:seg

Description

AT5G05410 (E=3e-078) DREB2A, DREB2 | DREB2A; DNA binding / transcription activator/ transcription factor

Coordinates

chrA03:+:926845..927831

Molecular Weight (calculated)

36822.7 Da

IEP (calculated)

4.916

GRAVY (calculated)

-0.825

Length

328 amino acids

Sequence
(BLAST)

001: MAVYFHSGDI NKTQLDTSRK RKSRSRRDGT TVAERLQIWK QYNDNVEEAS TKKRKVPAKG SKKGCMKGKG GPENGQCSFR GVRQRIWGKW VAEIREPNRG
101: SRLWLGTFPT ADEAACAYDE AARVMYGPMA RLNFPQSSVT DVTSSSSHSE VCTAPGLVHV KTEDADYESN SFVEADAKNG AYTHEEKVKK DVKVDAGSDW
201: LSEFEQKYWS EVLEEKEKQK KQVETCQKQP ASLSVSDYGW PEDLDQSHWE MFDVDELLGD LNGDMFTGLD QSQCLAGSVG GGLSESEKKQ IGLYPLQSLD
301: SSYGLPPLQL DAQDDNEFVD LRFLDLER

Best Arabidopsis Sequence Match ( AT5G05410.1 )
(BLAST)

001: MAVYDQSGDR NRTQIDTSRK RKSRSRGDGT TVAERLKRWK EYNETVEEVS TKKRKVPAKG SKKGCMKGKG GPENSRCSFR GVRQRIWGKW VAEIREPNRG
101: SRLWLGTFPT AQEAASAYDE AAKAMYGPLA RLNFPRSDAS EVTSTSSQSE VCTVETPGCV HVKTEDPDCE SKPFSGGVEP MYCLENGAEE MKRGVKADKH
201: WLSEFEHNYW SDILKEKEKQ KEQGIVETCQ QQQQDSLSVA DYGWPNDVDQ SHLDSSDMFD VDELLRDLNG DDVFAGLNQD RYPGNSVANG SYRPESQQSG
301: FDPLQSLNYG IPPFQLEGKD GNGFFDDLSY LDLEN

Arabidopsis Description

DREB2ADehydration-responsive element-binding protein 2A [Source:UniProtKB/Swiss-Prot;Acc:O82132]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.