Factsheet for Bra012861.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002404.1-P
Bra005852.1-P
Bra006620.1-P
Bra009112.1-P
Bra017443.1-P
Bra024875.1-P
Bra028759.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51260.1	Bra017443.1-P	AT2G01570.1	21798944
AT3G51260.1	Bra024875.1-P	AT2G01570.1	21798944
AT3G51260.1	Bra005852.1-P	AT5G05410.1	18552202
AT3G51260.1	Bra009112.1-P	AT5G05410.1	18552202
AT3G51260.1	Bra028759.1-P	AT5G05410.1	18552202
AT3G51260.1	Bra002404.1-P	AT5G22310.1	21798944
AT3G51260.1	Bra006620.1-P	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29009	Canola	cytosol	99.6	99.6
CDX90655	Canola	cytosol	99.6	99.6
Bra036824.1-P	Field mustard	cytosol	98.4	98.4
AT3G51260.1	Thale cress	cytosol	96.0	96.0
GSMUA_Achr2P03470_001	Banana	cytosol	91.6	91.97
GSMUA_Achr11P...	Banana	cytosol	91.6	91.97
KRH08047	Soybean	cytosol, endoplasmic reticulum, nucleus	91.2	91.57
KRH69759	Soybean	endoplasmic reticulum, nucleus	91.2	91.57
Solyc01g111450.2.1	Tomato	plastid	90.8	91.16
PGSC0003DMT400015849	Potato	cytosol	90.8	91.16
VIT_03s0038g02300.t01	Wine grape	cytosol	90.8	91.16
VIT_04s0023g03690.t01	Wine grape	cytosol	90.8	91.16
Os09t0538200-01	Rice	cytosol, plastid	89.2	89.56
EER97100	Sorghum	cytosol	89.2	89.56
Os08t0548900-01	Rice	plastid	89.2	89.56
Zm00001d022629_P001	Maize	cytosol	88.8	89.16
TraesCS7A01G272000.1	Wheat	cytosol	88.4	88.75
TraesCS5B01G329400.1	Wheat	cytosol	88.4	88.75
TraesCS5A01G329300.1	Wheat	cytosol	88.4	88.75
TraesCS7B01G170000.1	Wheat	cytosol, golgi, plastid, unclear	88.4	88.75
TraesCS7D01G272300.1	Wheat	cytosol	88.4	88.75
Zm00001d006235_P001	Maize	cytosol, extracellular	88.4	88.75
Zm00001d053217_P001	Maize	cytosol, extracellular	88.4	88.75
HORVU5Hr1G083350.1	Barley	cytosol	88.4	88.75
EES15231	Sorghum	cytosol	88.0	88.35
HORVU7Hr1G057390.2	Barley	cytosol, nucleus, plastid	88.4	77.82
Bra035099.1-P	Field mustard	cytosol	35.6	37.87
Bra008402.1-P	Field mustard	cytosol	35.6	37.87
Bra030921.1-P	Field mustard	cytosol	35.2	37.13
Bra003618.1-P	Field mustard	cytosol	35.6	36.33
Bra031328.1-P	Field mustard	cytosol, mitochondrion	35.2	35.2
Bra023851.1-P	Field mustard	cytosol	35.2	35.2
Bra015170.1-P	Field mustard	cytosol	34.0	34.55
Bra013157.1-P	Field mustard	cytosol	34.0	34.55
Bra014068.1-P	Field mustard	cytosol	34.4	31.85
Bra035332.1-P	Field mustard	cytosol	33.2	30.63
Bra027456.1-P	Field mustard	cytosol	33.6	30.55
Bra037085.1-P	Field mustard	cytosol	36.0	29.22
Bra034316.1-P	Field mustard	cytosol	27.2	27.31

Protein Annotations

MapMan:19.2.6.1.1.4	Gene3D:3.60.20.10	EnsemblPlantsGene:Bra012861	EnsemblPlants:Bra012861.1	EnsemblPlants:Bra012861.1-P	ncoils:Coil
GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0051603	InterPro:IPR023332	InterPro:IPR029055
UniProt:M4D8Q1	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584	ScanProsite:PS00388	PFscan:PS51475
PANTHER:PTHR11599	PANTHER:PTHR11599:SF106	InterPro:Proteasome_alpha-type	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	SMART:SM00948
SUPFAM:SSF56235	UniParc:UPI00025406D9	SEG:seg	:	:	:

Description

AT3G51260 (E=7e-120) PAD1 | PAD1 (20s proteasome alpha subunit pad1); endopeptidase/ peptidase/ threonine-type endopeptidase

Coordinates

chrA03:+:21886706..21888037

Molecular Weight (calculated)

27328.6 Da

IEP (calculated)

8.182

GRAVY (calculated)

-0.298

Length

250 amino acids

Sequence
(BLAST)

001: MARYDRAITV FSPDGHLFQV EYALEAVRKG NAAVGVRGTD TVVLAVEKKS TPKLQDTRSA RKIVSLDNHV ALACAGLKAD ARVLINKARI ECQSHRLTLE
101: DPVTVEYITR YIAGLQQKYT QSGGVRPFGL STLIVGFDPY TRIPALYQTD PSGTFSAWKA NATGRNSNSI REFLEKNYKE TSGQETVKLA IRALLEVVES
201: GGKNIEVALM TREEGTLRQL EEAEIDAIVA EIEAEKAAAE AAKKGPSKET

Best Arabidopsis Sequence Match ( AT3G51260.2 )
(BLAST)

001: MARYDRAITV FSPDGHLFQV EYALEAVRKG NAAVGVRGTD TVVLAVEKKS TPKLQDSRSA RKIVSLDNHI ALACAGLKAD ARVLINKARI ECQSHRLTLE
101: DPVTVEYITR YIAGLQQKYT QSGGVRPFGL STLIVGFDPY TRIPALYQTD PSGTFSAWKA NATGRNSNSI REFLEKNYKE SAGQETVKLA IRALLEVVES
201: GGKNIEVAVM TREEEEEIDI IVAEIEAEKA AAEAAKKGPA KET

Arabidopsis Description

PAD1Proteasome endopeptidase complex [Source:UniProtKB/TrEMBL;Acc:A0A178VPE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.