Factsheet for TraesCS7B01G170000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, plastid, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, plastid, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22160430
golgi: 25769308
unclear: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G221900.1
TraesCS1B01G235100.2
TraesCS1D01G223600.2
TraesCS2A01G282200.1
TraesCS2B01G299400.1
TraesCS2D01G281000.1
TraesCS4A01G271000.1
TraesCS4A01G466700.1
TraesCS4B01G043100.1
TraesCS4D01G040400.1
TraesCS7A01G134600.1
TraesCS7B01G035800.1
TraesCS7D01G134000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51260.1	TraesCS4A01G271000.1	AT1G14920.1	21798944
AT3G51260.1	TraesCS4A01G466700.1	AT1G14920.1	21798944
AT3G51260.1	TraesCS4B01G043100.1	AT1G14920.1	21798944
AT3G51260.1	TraesCS4D01G040400.1	AT1G14920.1	21798944
AT3G51260.1	TraesCS4A01G271000.1	AT2G01570.1	21798944
AT3G51260.1	TraesCS4A01G466700.1	AT2G01570.1	21798944
AT3G51260.1	TraesCS4B01G043100.1	AT2G01570.1	21798944
AT3G51260.1	TraesCS4D01G040400.1	AT2G01570.1	21798944
AT3G51260.1	TraesCS1A01G221900.1	AT5G05410.1	18552202
AT3G51260.1	TraesCS1B01G235100.2	AT5G05410.1	18552202
AT3G51260.1	TraesCS1D01G223600.2	AT5G05410.1	18552202
AT3G51260.1	TraesCS2A01G282200.1	AT5G22310.1	21798944
AT3G51260.1	TraesCS2B01G299400.1	AT5G22310.1	21798944
AT3G51260.1	TraesCS2D01G281000.1	AT5G22310.1	21798944
AT3G51260.1	TraesCS7A01G134600.1	AT5G22310.1	21798944
AT3G51260.1	TraesCS7B01G035800.1	AT5G22310.1	21798944
AT3G51260.1	TraesCS7D01G134000.1	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G272300.1	Wheat	cytosol	100.0	100.0
TraesCS7A01G272000.1	Wheat	cytosol	100.0	100.0
TraesCS5B01G329400.1	Wheat	cytosol	97.19	97.19
Os08t0548900-01	Rice	plastid	96.79	96.79
Zm00001d053217_P001	Maize	cytosol, extracellular	96.39	96.39
EES15231	Sorghum	cytosol	96.39	96.39
GSMUA_Achr11P...	Banana	cytosol	91.97	91.97
GSMUA_Achr2P03470_001	Banana	cytosol	91.97	91.97
VIT_04s0023g03690.t01	Wine grape	cytosol	91.16	91.16
VIT_03s0038g02300.t01	Wine grape	cytosol	90.76	90.76
KRH08047	Soybean	cytosol, endoplasmic reticulum, nucleus	90.36	90.36
KRH69759	Soybean	endoplasmic reticulum, nucleus	89.96	89.96
AT5G66140.1	Thale cress	cytosol	89.56	89.2
AT3G51260.1	Thale cress	cytosol	89.16	88.8
PGSC0003DMT400015849	Potato	cytosol	88.75	88.75
Solyc01g111450.2.1	Tomato	plastid	88.75	88.75
Bra012861.1-P	Field mustard	cytosol	88.75	88.4
CDY29009	Canola	cytosol	88.35	88.0
CDX90655	Canola	cytosol	88.35	88.0
CDX77988	Canola	cytosol, extracellular	87.95	87.6
CDX73737	Canola	cytosol, extracellular	87.95	87.6
Bra036824.1-P	Field mustard	cytosol	87.95	87.6
HORVU7Hr1G057390.2	Barley	cytosol, nucleus, plastid	98.8	86.62
CDX81411	Canola	mitochondrion, plastid	66.27	58.3
TraesCS4B01G151700.1	Wheat	golgi, unclear	36.14	37.97
TraesCS5B01G114000.1	Wheat	golgi, plastid, unclear	36.14	37.97
TraesCS2B01G217800.1	Wheat	cytosol	35.74	37.87
TraesCS3B01G319500.1	Wheat	cytosol	35.74	36.78
TraesCS7B01G030800.1	Wheat	plastid	35.34	35.2
TraesCS1B01G319100.1	Wheat	cytosol	29.72	29.72
TraesCS5B01G286900.1	Wheat	cytosol	29.72	29.72
TraesCS6B01G126000.1	Wheat	cytosol	32.93	28.37
TraesCS2B01G196400.1	Wheat	mitochondrion	27.71	23.71

Protein Annotations

MapMan:19.2.6.1.1.4	Gene3D:3.60.20.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005839	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0019773	GO:GO:0051603	InterPro:IPR023332	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227
PFAM:PF10584	ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF106	InterPro:Proteasome_alpha-type
InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	SMART:SM00948	SUPFAM:SSF56235	EnsemblPlantsGene:TraesCS7B01G170000	EnsemblPlants:TraesCS7B01G170000.1
TIGR:cd03755	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7B:-:241559604..241563787

Molecular Weight (calculated)

27336.5 Da

IEP (calculated)

7.563

GRAVY (calculated)

-0.384

Length

249 amino acids

Sequence
(BLAST)

001: MARYDRAITV FSPDGHLFQV EYALEAVRKG NAAVGVRGVD TVVLGVEKKS TPKLQDSRSV RKIASLDTHI ALACAGLKAD ARVLINRARV ECQSHRLTVE
101: DPVTVEYITR YIAGLQQKYT QSGGVRPFGL STLIVGFDPY TEKPALYQTD PSGTFSAWKA NATGRNSNSM REFLEKNYKE TSGKETIKLT IRALLEVVES
201: GGKNIEIAVM THKDGLRQLE EEEIDEYVAE IEAEKAAAEA AKKGGPKDT

Best Arabidopsis Sequence Match ( AT5G66140.1 )
(BLAST)

001: MARYDRAITV FSPDGHLFQV EYALEAVRKG NAAVGVRGTD TVVLAVEKKS TPKLQDSRSA RKIVSLDNHI ALACAGLKAD ARVLINKARI ECQSHRLTLE
101: DPVTVEYITR YIAGLQQKYT QSGGVRPFGL STLIVGFDPY SRLPSLYQTD PSGTFSAWKA NATGRNSNSI REFLEKNYKE SSGQETIKLA IRALLEVVES
201: GGKNIEVAVM TREETGLRQL EEAEIDAIVA KIEAEKAAAE AAKKGPPKET

Arabidopsis Description

PAD2Proteasome subunit alpha type-7-B [Source:UniProtKB/Swiss-Prot;Acc:O24616]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.