Factsheet for TraesCS2B01G196400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G122700.1
TraesCS1B01G141900.1
TraesCS1D01G123600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G05840.1	TraesCS1A01G122700.1	AT5G40580.1	21798944
AT2G05840.1	TraesCS1B01G141900.1	AT5G40580.1	21798944
AT2G05840.1	TraesCS1D01G123600.1	AT5G40580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G170100.1	Wheat	mitochondrion	88.32	95.9
TraesCS2D01G177600.1	Wheat	mitochondrion	88.32	95.9
GSMUA_Achr10P...	Banana	cytosol	47.08	55.69
Solyc12g009140.1.1	Tomato	extracellular	46.74	55.28
PGSC0003DMT400007520	Potato	cytosol, extracellular	46.74	55.28
KRH26034	Soybean	nucleus	46.39	54.88
KRH55422	Soybean	cytosol, endoplasmic reticulum	46.39	54.88
VIT_09s0002g00980.t01	Wine grape	cytosol	46.05	54.47
GSMUA_Achr6P11610_001	Banana	cytosol	46.05	54.47
AT2G05840.1	Thale cress	cytosol	45.36	53.66
CDY50408	Canola	cytosol, extracellular	44.67	53.28
CDY18045	Canola	cytosol	45.02	53.25
CDY33398	Canola	cytosol, extracellular	45.02	53.25
Bra015170.1-P	Field mustard	cytosol	45.02	53.25
Bra013157.1-P	Field mustard	cytosol	45.02	53.25
Os07t0614100-01	Rice	cytosol	46.05	52.96
AT5G35590.1	Thale cress	cytosol	44.67	52.85
KXG36677	Sorghum	plastid	46.74	49.63
CDX93103	Canola	cytosol	44.67	49.43
GSMUA_Achr3P02110_001	Banana	cytosol	19.93	42.34
Zm00001d022131_P001	Maize	mitochondrion	43.64	39.94
TraesCS5B01G329400.1	Wheat	cytosol	24.05	28.11
TraesCS7B01G170000.1	Wheat	cytosol, golgi, plastid, unclear	23.71	27.71
TraesCS5B01G114000.1	Wheat	golgi, plastid, unclear	22.34	27.43
TraesCS4B01G151700.1	Wheat	golgi, unclear	21.65	26.58
TraesCS2B01G217800.1	Wheat	cytosol	21.31	26.38
TraesCS3B01G319500.1	Wheat	cytosol	21.31	25.62
TraesCS7B01G030800.1	Wheat	plastid	21.31	24.8
TraesCS1B01G319100.1	Wheat	cytosol	20.62	24.1
TraesCS5B01G286900.1	Wheat	cytosol	20.62	24.1
TraesCS6B01G126000.1	Wheat	cytosol	23.71	23.88

Protein Annotations

Gene3D:3.60.20.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005839	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773
GO:GO:0051603	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFAM:PF10584	ScanProsite:PS00388
PANTHER:PTHR11599	PANTHER:PTHR11599:SF54	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	SMART:SM00948	SUPFAM:SSF56235
EnsemblPlantsGene:TraesCS2B01G196400	EnsemblPlants:TraesCS2B01G196400.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2B:+:174588653..174591981

Molecular Weight (calculated)

32083.1 Da

IEP (calculated)

5.981

GRAVY (calculated)

-0.358

Length

291 amino acids

Sequence
(BLAST)

001: MSGSVGESRS SRRRTAAKSP RYDRSITVFS PEGRVFQVDY ARNSVKLEGI TSVAVRGADS VCVITQRTKA PADPLLDTAD PPFMHLFQIT ERLGMLATGM
101: PGHDDTLPFY LSTSVLLTGI FVTEADGRAL AQQARNEAAG FRYKWGYEMP PKMLAQWLGD RAQVRTQHDG MRPYRVVATV VGIDEEKGTP ELFTCDPAGQ
201: VLGHKATSVG LEDQEAIEFL EEAMAGNSSL SFQETMEMAV SALRHVLEDN NQGHDIEVGV VRKNYPTFRT VLRRIYKNPL AGQNILDGEG Q

Best Arabidopsis Sequence Match ( AT2G05840.1 )
(BLAST)

001: MSRGSGAGYD RHITIFSPEG RLFQVEYAFK AVKAAGITSI GVRGKDSVCV VTQKKVPDKL LDQSSVSHLF PVTKYLGLLA TGMTADSRSL VQQARNEAAE
101: FRFQYGYEMP ADILAKWIAD KSQVYTQHAY MRPLGVVAMV LGIDEERGPL LYKCDPAGHF YGHKATSAGM KEQEAVNFLE KKMKENPAFT YDETVQTAIS
201: ALQSVLQEDF KATEIEVGVV RADDPLFRSL RTEEIDEHLT AISERD

Arabidopsis Description

PAA2Proteasome subunit alpha type-6-B [Source:UniProtKB/Swiss-Prot;Acc:O81147]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.