Factsheet for TraesCS4B01G151700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear

Predictor Summary:

peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, unclear
Any Predictor:	cytosol, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G157700.1	Wheat	peroxisome	99.16	99.16
HORVU4Hr1G040770.1	Barley	cytosol	98.73	98.73
TraesCS4A01G167300.1	Wheat	peroxisome	97.89	97.89
Os11t0615700-01	Rice	peroxisome	97.47	97.47
Zm00001d027688_P002	Maize	peroxisome	96.62	96.62
TraesCS5B01G114000.1	Wheat	golgi, plastid, unclear	96.62	96.62
EES10115	Sorghum	peroxisome	96.62	96.62
OQU93221	Sorghum	cytosol	96.62	96.62
GSMUA_Achr11P...	Banana	peroxisome	95.78	95.78
GSMUA_Achr10P...	Banana	peroxisome	94.94	94.94
KRG90710	Soybean	peroxisome	94.09	94.09
KRH69234	Soybean	endoplasmic reticulum	94.09	94.09
KRH36037	Soybean	endoplasmic reticulum, nucleus	94.09	94.09
Solyc02g070510.2.1	Tomato	nucleus	93.67	93.67
PGSC0003DMT400054523	Potato	cytosol	93.67	93.67
KRH31817	Soybean	cytosol	93.25	93.25
Solyc08g016510.2.1	Tomato	extracellular	92.83	92.83
PGSC0003DMT400024982	Potato	cytosol, nucleus, peroxisome	92.83	92.83
AT1G53850.1	Thale cress	cytosol	92.41	92.41
AT3G14290.1	Thale cress	cytosol	91.98	91.98
Bra030921.1-P	Field mustard	cytosol	91.98	91.98
CDY08208	Canola	peroxisome	90.72	88.11
CDY51800	Canola	peroxisome	90.72	86.0
CDY02493	Canola	mitochondrion	91.98	77.86
Zm00001d048403_P001	Maize	extracellular	96.2	77.82
CDY25683	Canola	cytosol, plastid	91.98	77.03
VIT_09s0002g00350.t01	Wine grape	endoplasmic reticulum	94.09	76.11
GSMUA_Achr6P10850_001	Banana	mitochondrion	90.3	70.16
TraesCS7B01G030800.1	Wheat	plastid	39.66	37.6
TraesCS5B01G329400.1	Wheat	cytosol	37.97	36.14
TraesCS7B01G170000.1	Wheat	cytosol, golgi, plastid, unclear	37.97	36.14
TraesCS2B01G217800.1	Wheat	cytosol	32.91	33.19
TraesCS3B01G319500.1	Wheat	cytosol	32.91	32.23
TraesCS6B01G126000.1	Wheat	cytosol	35.44	29.07
TraesCS5B01G286900.1	Wheat	cytosol	29.11	27.71
TraesCS1B01G319100.1	Wheat	cytosol	29.11	27.71
TraesCS2B01G196400.1	Wheat	mitochondrion	26.58	21.65

Protein Annotations

MapMan:19.2.6.1.1.5	Gene3D:3.60.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005839	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773
GO:GO:0043161	GO:GO:0051603	InterPro:IPR023332	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227
PFAM:PF10584	ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF14	InterPro:Proteasome_alpha-type
InterPro:Proteasome_alpha_type_5	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	SMART:SM00948	SUPFAM:SSF56235	EnsemblPlantsGene:TraesCS4B01G151700
EnsemblPlants:TraesCS4B01G151700.1	TIGR:cd03753	:	:	:	:

Description

No Description!

Coordinates

chr4B:-:245083438..245087170

Molecular Weight (calculated)

25917.7 Da

IEP (calculated)

4.355

GRAVY (calculated)

-0.178

Length

237 amino acids

Sequence
(BLAST)

001: MFLTRTEYDR GVNTFSPEGR LFQVEYAIEA IKLGSTAIGL MTKDGVVLAV EKRVTSPLLE PSSVEKIMEI DEHVGCAMSG LIADARTLVE HARVETQNHR
101: FSYGEPMTVE STTQAICDLA LRFGEGDEES MSRPFGVSLL IAGHDENGPS MYYTDPSGTF WQCNAKAIGS GSEGADSSLQ EQYNKELTIA EAETIALSIL
201: KQVMEEKVTP NNVDIAKVSP SYHLYTPAEV EAVIARL

Best Arabidopsis Sequence Match ( AT1G53850.1 )
(BLAST)

001: MFLTRTEYDR GVNTFSPEGR LFQVEYAIEA IKLGSTAIGV KTKEGVVLAV EKRITSPLLE PSSVEKIMEI DDHIGCAMSG LIADARTLVE HARVETQNHR
101: FSYGEPMTVE STTQALCDLA LRFGEGEEES MSRPFGVSLL IAGHDENGPS LYYTDPSGTF WQCNAKAIGS GSEGADSSLQ EQFNKDLSLQ EAETIAVSIL
201: KQVMEEKVTP NNVDIAKVAP AYHLYTPQEV EAVIARL

Arabidopsis Description

PAE1Proteasome subunit alpha type-5-A [Source:UniProtKB/Swiss-Prot;Acc:O81149]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.