Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- peroxisome 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g016510.2.1 | Tomato | extracellular | 100.0 | 100.0 |
| PGSC0003DMT400054523 | Potato | cytosol | 98.73 | 98.73 |
| KRH69234 | Soybean | endoplasmic reticulum | 97.47 | 97.47 |
| KRH36037 | Soybean | endoplasmic reticulum, nucleus | 96.62 | 96.62 |
| KRH31817 | Soybean | cytosol | 96.62 | 96.62 |
| KRG90710 | Soybean | peroxisome | 96.62 | 96.62 |
| GSMUA_Achr11P... | Banana | peroxisome | 96.2 | 96.2 |
| AT3G14290.1 | Thale cress | cytosol | 94.94 | 94.94 |
| Bra030921.1-P | Field mustard | cytosol | 94.94 | 94.94 |
| Os11t0615700-01 | Rice | peroxisome | 94.51 | 94.51 |
| AT1G53850.1 | Thale cress | cytosol | 94.51 | 94.51 |
| EES10115 | Sorghum | peroxisome | 93.67 | 93.67 |
| OQU93221 | Sorghum | cytosol | 93.67 | 93.67 |
| Zm00001d027688_P002 | Maize | peroxisome | 93.67 | 93.67 |
| TraesCS5B01G114000.1 | Wheat | golgi, plastid, unclear | 93.67 | 93.67 |
| HORVU4Hr1G040770.1 | Barley | cytosol | 93.25 | 93.25 |
| TraesCS4A01G167300.1 | Wheat | peroxisome | 93.25 | 93.25 |
| TraesCS4D01G157700.1 | Wheat | peroxisome | 92.83 | 92.83 |
| TraesCS4B01G151700.1 | Wheat | golgi, unclear | 92.83 | 92.83 |
| CDY08208 | Canola | peroxisome | 93.67 | 90.98 |
| CDY51800 | Canola | peroxisome | 93.67 | 88.8 |
| TraesCS5D01G121300.1 | Wheat | peroxisome | 86.92 | 86.92 |
| TraesCS5A01G109000.1 | Wheat | peroxisome | 70.89 | 86.6 |
| CDY02493 | Canola | mitochondrion | 94.94 | 80.36 |
| CDY25683 | Canola | cytosol, plastid | 94.94 | 79.51 |
| VIT_09s0002g00350.t01 | Wine grape | endoplasmic reticulum | 96.62 | 78.16 |
| Zm00001d048403_P001 | Maize | extracellular | 93.25 | 75.43 |
| PGSC0003DMT400018852 | Potato | cytosol | 41.35 | 39.52 |
| PGSC0003DMT400049388 | Potato | cytosol | 41.35 | 39.36 |
| PGSC0003DMT400015849 | Potato | cytosol | 37.55 | 35.74 |
| PGSC0003DMT400027339 | Potato | cytosol | 32.91 | 33.19 |
| PGSC0003DMT400052657 | Potato | cytosol | 32.49 | 32.77 |
| PGSC0003DMT400009588 | Potato | cytosol | 36.71 | 31.75 |
| PGSC0003DMT400039976 | Potato | cytosol | 36.29 | 31.5 |
| PGSC0003DMT400007520 | Potato | cytosol, extracellular | 31.22 | 30.08 |
| PGSC0003DMT400072226 | Potato | cytosol | 29.54 | 28.11 |
| PGSC0003DMT400018521 | Potato | cytosol | 29.54 | 28.11 |
Protein Annotations
| EntrezGene:102599627 | MapMan:19.2.6.1.1.5 | Gene3D:3.60.20.10 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004175 | GO:GO:0004298 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0005839 | GO:GO:0006508 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008233 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0019773 |
| GO:GO:0043161 | GO:GO:0051603 | InterPro:IPR023332 | InterPro:IPR029055 | UniProt:M1AKV3 | InterPro:Ntn_hydrolases_N |
| PFAM:PF00227 | PFAM:PF10584 | EnsemblPlantsGene:PGSC0003DMG400009650 | PGSC:PGSC0003DMG400009650 | EnsemblPlants:PGSC0003DMT400024982 | ScanProsite:PS00388 |
| PFscan:PS51475 | PANTHER:PTHR11599 | PANTHER:PTHR11599:SF14 | InterPro:Proteasome_alpha-type | InterPro:Proteasome_alpha_type_5 | InterPro:Proteasome_asu_N |
| InterPro:Proteasome_sua/b | SMART:SM00948 | SUPFAM:SSF56235 | UniParc:UPI000276B875 | RefSeq:XP_006356875.1 | : |
Description
Proteasome subunit alpha type-5 [Source:PGSC_GENE;Acc:PGSC0003DMG400009650]
Coordinates
chr8:-:10207697..10214222
Molecular Weight (calculated)
26069.8 Da
IEP (calculated)
4.423
GRAVY (calculated)
-0.249
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MFLTRTEYDR GVNTFSPEGR LFQVEYAIEA IKLGSTAIGI KTKEGVVLAV EKRITSPLLE PSSVEKIMEI DEHIGCAMSG LIADARTLVE HARVETQNHR
101: FSYGEPMTVE STTQALCDLA LRFGEGDEES MSRPFGVSLL IAGHDENGPS LYYTDPSGTF WQCNAKAIGS GSEGADSSLQ EQFNKDLTLK EAETIALSIL
201: KQVMEEKVTP NNVDIARVSP TYHLYSPSEV EDVISRL
101: FSYGEPMTVE STTQALCDLA LRFGEGDEES MSRPFGVSLL IAGHDENGPS LYYTDPSGTF WQCNAKAIGS GSEGADSSLQ EQFNKDLTLK EAETIALSIL
201: KQVMEEKVTP NNVDIARVSP TYHLYSPSEV EDVISRL
001: MFLTRTEYDR GVNTFSPEGR LFQVEYAIEA IKLGSTAIGV KTKEGVVLAV EKRITSPLLE PSSVEKIMEI DDHIGCAMSG LIADARTLVE HARVETQNHR
101: FSYGEPMTVE STTQALCDLA LRFGEGEEES MSRPFGVSLL IAGHDENGPS LYYTDPSGTF WQCNAKAIGS GSEGADSSLQ EQFNKDITLQ EAETIAVSIL
201: KQVMEEKVTP NNVDIAKVAP AYHLYTPQEV EAVISRL
101: FSYGEPMTVE STTQALCDLA LRFGEGEEES MSRPFGVSLL IAGHDENGPS LYYTDPSGTF WQCNAKAIGS GSEGADSSLQ EQFNKDITLQ EAETIAVSIL
201: KQVMEEKVTP NNVDIAKVAP AYHLYTPQEV EAVISRL
Arabidopsis Description
PAE2Proteasome subunit alpha type-5-B [Source:UniProtKB/Swiss-Prot;Acc:Q42134]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.