Factsheet for PGSC0003DMT400054523

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
peroxisome 3
cytosol 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400040141
PGSC0003DMT400040142
PGSC0003DMT400040143
PGSC0003DMT400040144
PGSC0003DMT400040206
PGSC0003DMT400040207
PGSC0003DMT400077934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53850.1	PGSC0003DMT400040141	AT3G46090.1	17259181
AT1G53850.1	PGSC0003DMT400040142	AT3G46090.1	17259181
AT1G53850.1	PGSC0003DMT400040143	AT3G46090.1	17259181
AT1G53850.1	PGSC0003DMT400040144	AT3G46090.1	17259181
AT1G53850.1	PGSC0003DMT400040206	AT3G46090.1	17259181
AT1G53850.1	PGSC0003DMT400040207	AT3G46090.1	17259181
AT1G53850.1	PGSC0003DMT400077934	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g070510.2.1	Tomato	nucleus	100.0	100.0
PGSC0003DMT400024982	Potato	cytosol, nucleus, peroxisome	98.73	98.73
KRH69234	Soybean	endoplasmic reticulum	97.47	97.47
KRH36037	Soybean	endoplasmic reticulum, nucleus	97.47	97.47
KRG90710	Soybean	peroxisome	97.47	97.47
GSMUA_Achr11P...	Banana	peroxisome	97.05	97.05
KRH31817	Soybean	cytosol	96.62	96.62
Os11t0615700-01	Rice	peroxisome	95.36	95.36
AT3G14290.1	Thale cress	cytosol	94.51	94.51
EES10115	Sorghum	peroxisome	94.51	94.51
Bra030921.1-P	Field mustard	cytosol	94.51	94.51
Zm00001d027688_P002	Maize	peroxisome	94.51	94.51
OQU93221	Sorghum	cytosol	94.51	94.51
AT1G53850.1	Thale cress	cytosol	94.09	94.09
TraesCS4A01G167300.1	Wheat	peroxisome	94.09	94.09
HORVU4Hr1G040770.1	Barley	cytosol	94.09	94.09
TraesCS5B01G114000.1	Wheat	golgi, plastid, unclear	93.67	93.67
TraesCS4D01G157700.1	Wheat	peroxisome	93.67	93.67
TraesCS4B01G151700.1	Wheat	golgi, unclear	93.67	93.67
CDY08208	Canola	peroxisome	93.25	90.57
CDY51800	Canola	peroxisome	93.25	88.4
TraesCS5D01G121300.1	Wheat	peroxisome	86.92	86.92
TraesCS5A01G109000.1	Wheat	peroxisome	70.46	86.08
CDY02493	Canola	mitochondrion	94.51	80.0
CDY25683	Canola	cytosol, plastid	94.51	79.15
VIT_09s0002g00350.t01	Wine grape	endoplasmic reticulum	96.62	78.16
Zm00001d048403_P001	Maize	extracellular	94.09	76.11
PGSC0003DMT400018852	Potato	cytosol	41.35	39.52
PGSC0003DMT400049388	Potato	cytosol	41.35	39.36
PGSC0003DMT400015849	Potato	cytosol	37.97	36.14
PGSC0003DMT400027339	Potato	cytosol	32.49	32.77
PGSC0003DMT400052657	Potato	cytosol	32.07	32.34
PGSC0003DMT400009588	Potato	cytosol	36.71	31.75
PGSC0003DMT400039976	Potato	cytosol	36.29	31.5
PGSC0003DMT400007520	Potato	cytosol, extracellular	31.65	30.49
PGSC0003DMT400072226	Potato	cytosol	29.11	27.71
PGSC0003DMT400018521	Potato	cytosol	29.11	27.71

Protein Annotations

EntrezGene:102583874	MapMan:19.2.6.1.1.5	Gene3D:3.60.20.10	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824
GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773
GO:GO:0043161	GO:GO:0051603	InterPro:IPR023332	InterPro:IPR029055	UniProt:M1BWH6	InterPro:Ntn_hydrolases_N
PFAM:PF00227	PFAM:PF10584	EnsemblPlantsGene:PGSC0003DMG400021163	PGSC:PGSC0003DMG400021163	EnsemblPlants:PGSC0003DMT400054523	ScanProsite:PS00388
PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF14	InterPro:Proteasome_alpha-type	InterPro:Proteasome_alpha_type_5	InterPro:Proteasome_asu_N
InterPro:Proteasome_sua/b	SMART:SM00948	SUPFAM:SSF56235	UniParc:UPI0002768852	RefSeq:XP_006352967.1	:

Description

Proteasome subunit alpha type [Source:PGSC_GENE;Acc:PGSC0003DMG400021163]

Coordinates

chr2:+:29683419..29691202

Molecular Weight (calculated)

26099.8 Da

IEP (calculated)

4.428

GRAVY (calculated)

-0.269

Length

237 amino acids

Sequence
(BLAST)

001: MFLTRTEYDR GVNTFSPEGR LFQVEYAIEA IKLGSTAIGL KTKEGVVLAV EKRITSPLLE PSSVEKIMEI DEHIGCAMSG LIADARTLVE HARVETQNHR
101: FSYGEPMTVE STTQALCDLA LRFGEGDEES MSRPFGVSLL IAGHDENGPS LYYTDPSGTF WQCNAKAIGS GSEGADSSLQ EQYNKDLTLK EAETIALSIL
201: KQVMEEKVTP NNVDIARVSP TYHLYSPSEV EEVISRL

Best Arabidopsis Sequence Match ( AT3G14290.1 )
(BLAST)

001: MFLTRTEYDR GVNTFSPEGR LFQVEYAIEA IKLGSTAIGV KTKEGVVLAV EKRITSPLLE PSSVEKIMEI DDHIGCAMSG LIADARTLVE HARVETQNHR
101: FSYGEPMTVE STTQALCDLA LRFGEGEEES MSRPFGVSLL IAGHDENGPS LYYTDPSGTF WQCNAKAIGS GSEGADSSLQ EQFNKDITLQ EAETIAVSIL
201: KQVMEEKVTP NNVDIAKVAP AYHLYTPQEV EAVISRL

Arabidopsis Description

PAE2Proteasome subunit alpha type-5-B [Source:UniProtKB/Swiss-Prot;Acc:Q42134]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.